Gene name: RRP42
Reference locus (S288C): YDL111C
Gene biotype: protein_coding
Description: Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp42p (EXOSC7)
Top 10 interactors (score): CSL4 (0.999); RRP4 (0.999); SKI6 (0.999); MTR4 (0.999); RRP45 (0.999); DIS3 (0.999); MPP6 (0.999); SKI7 (0.999); MTR3 (0.999); RRP46 (0.999); RRP6 (0.999); RRP43 (0.999); RRP40 (0.999); LRP1 (0.998); RRP9 (0.978); IMP4 (0.974); SKI2 (0.963); DSS1 (0.963); SKI3 (0.943); NOC4 (0.94)
Homologues (species, bitscore): EXOSC7 (Homo sapiens, 70.5); Exosc7 (Mus musculus, 70.9); exosc7 (Danio rerio, 61.2); exosc7 (Xenopus tropicalis, 68.9); Rrp42 (Drosophila melanogaster, 63.9); AT3G07750 (Arabidopsis thaliana, 68.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:247938-248735:- | gene-YDL111C_AKU4011 | rna-NM_001180170.1_AKU4011 | cds-NP_010172.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:301216-302013:+ | gene-YDL111C_BG1 | rna-NM_001180170.1_BG1 | cds-NP_010172.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:265349-266146:- | gene-YDL111C_Bruggeman | rna-NM_001180170.1_Bruggeman | cds-NP_010172.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:262089-262886:- | gene-YDL111C_CAT1 | rna-NM_001180170.1_CAT1 | cds-NP_010172.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:246198-246995:- | gene-YDL111C_CBS1585 | rna-NM_001180170.1_CBS1585 | cds-NP_010172.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:262858-263655:- | gene-YDL111C_CBS436 | rna-NM_001180170.1_CBS436 | cds-NP_010172.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:244624-245421:- | gene-YDL111C_CBS6412 | rna-NM_001180170.1_CBS6412 | cds-NP_010172.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:264359-265156:- | gene-YDL111C_CBS6413 | rna-NM_001180170.1_CBS6413 | cds-NP_010172.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:262085-262882:- | gene-YDL111C_CENPK1137D | rna-NM_001180170.1_CENPK1137D | cds-NP_010172.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:258965-259762:- | gene-YDL111C_EthanolRed | rna-NM_001180170.1_EthanolRed | cds-NP_010172.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:264935-265732:- | gene-YDL111C_FaliES1 | rna-NM_001180170.1_FaliES1 | cds-NP_010172.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:34978-35775:- | gene-YDL111C_JAY291 | rna-NM_001180170.1_JAY291 | cds-NP_010172.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:263136-263933:- | gene-YDL111C_MUCL30387 | rna-NM_001180170.1_MUCL30387 | cds-NP_010172.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:253894-254691:- | gene-YDL111C_MUCL30388 | rna-NM_001180170.1_MUCL30388 | cds-NP_010172.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:247304-248101:- | gene-YDL111C_MUCL39482 | rna-NM_001180170.1_MUCL39482 | cds-NP_010172.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:169088-169885:- | gene-YDL111C_MUCL42920 | rna-NM_001180170.1_MUCL42920 | cds-NP_010172.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:263236-264033:- | gene-YDL111C_NCIM3186 | rna-NM_001180170.1_NCIM3186 | cds-NP_010172.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:247332-248129:- | gene-YDL111C_NCYC1407 | rna-NM_001180170.1_NCYC1407 | cds-NP_010172.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:254089-254886:- | gene-YDL111C_PE2H3 | rna-NM_001180170.1_PE2H3 | cds-NP_010172.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:254093-254890:- | gene-YDL111C_PE2H4 | rna-NM_001180170.1_PE2H4 | cds-NP_010172.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:263313-264110:- | gene-YDL111C_S288C | rna-NM_001180170.1_S288C | cds-NP_010172.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:170800-171597:+ | gene-YDL111C_SA1 | rna-NM_001180170.1_SA1 | cds-NP_010172.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:264446-265243:- | gene-YDL111C_ThermosaccDry | rna-NM_001180170.1_ThermosaccDry | cds-NP_010172.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:266551-267348:- | gene-YDL111C_VR1 | rna-NM_001180170.1_VR1 | cds-NP_010172.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:262373-263170:- | gene-YDL111C_ZTW1 | rna-NM_001180170.1_ZTW1 | cds-NP_010172.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:264530-265327:- | gene-YDL111C_Sparadoxus | rna-NM_001180170.1_Sparadoxus | cds-NP_010172.1_Sparadoxus | 90.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |