Gene name: RRP4
Reference locus (S288C): YHR069C
Gene biotype: protein_coding
Description: Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; has similarity to human hRrp4p (EXOSC2)
Top 10 interactors (score): RRP43 (0.999); RRP6 (0.999); MTR3 (0.999); MPP6 (0.999); SKI7 (0.999); RRP46 (0.999); LRP1 (0.999); CSL4 (0.999); RRP40 (0.999); RRP42 (0.999); SKI6 (0.999); DIS3 (0.999); MTR4 (0.999); RRP45 (0.999); UTP6 (0.988); SOF1 (0.988); NOC4 (0.987); SDA1 (0.987); UTP15 (0.987); ENP1 (0.986)
Homologues (species, bitscore): EXOSC2 (Homo sapiens, 218.4); Exosc2 (Mus musculus, 216.9); exosc2 (Danio rerio, 233.0); exosc2 (Xenopus tropicalis, 223.8); Rrp4 (Drosophila melanogaster, 227.3); exos-2 (Caenorhabditis elegans, 191.4); RRP4 (Arabidopsis thaliana, 167.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:219857-220936:- | gene-YHR069C_AKU4011 | rna-NM_001179199.1_AKU4011 | cds-NP_011936.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:141288-142367:- | gene-YHR069C_BG1 | rna-NM_001179199.1_BG1 | cds-NP_011936.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:227596-228675:- | gene-YHR069C_Bruggeman | rna-NM_001179199.1_Bruggeman | cds-NP_011936.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:222400-223479:- | gene-YHR069C_CAT1 | rna-NM_001179199.1_CAT1 | cds-NP_011936.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:218966-220045:- | gene-YHR069C_CBS1585 | rna-NM_001179199.1_CBS1585 | cds-NP_011936.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:216905-217984:- | gene-YHR069C_CBS436 | rna-NM_001179199.1_CBS436 | cds-NP_011936.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:219178-220257:- | gene-YHR069C_CBS6412 | rna-NM_001179199.1_CBS6412 | cds-NP_011936.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:220009-221088:- | gene-YHR069C_CBS6413 | rna-NM_001179199.1_CBS6413 | cds-NP_011936.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:226741-227820:- | gene-YHR069C_CENPK1137D | rna-NM_001179199.1_CENPK1137D | cds-NP_011936.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:279523-280602:- | gene-YHR069C_EthanolRed | rna-NM_001179199.1_EthanolRed | cds-NP_011936.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:220319-221398:- | gene-YHR069C_FaliES1 | rna-NM_001179199.1_FaliES1 | cds-NP_011936.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:3069-4148:- | gene-YHR069C_JAY291 | rna-NM_001179199.1_JAY291 | cds-NP_011936.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:227334-228413:- | gene-YHR069C_MUCL30387 | rna-NM_001179199.1_MUCL30387 | cds-NP_011936.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:227231-228310:- | gene-YHR069C_MUCL30388 | rna-NM_001179199.1_MUCL30388 | cds-NP_011936.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:219232-220311:- | gene-YHR069C_MUCL39482 | rna-NM_001179199.1_MUCL39482 | cds-NP_011936.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:226111-227190:- | gene-YHR069C_MUCL42920 | rna-NM_001179199.1_MUCL42920 | cds-NP_011936.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:233461-234540:- | gene-YHR069C_NCIM3186 | rna-NM_001179199.1_NCIM3186 | cds-NP_011936.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:690873-691952:- | gene-YHR069C_NCYC1407 | rna-NM_001179199.1_NCYC1407 | cds-NP_011936.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:221434-222513:- | gene-YHR069C_PE2H3 | rna-NM_001179199.1_PE2H3 | cds-NP_011936.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:228881-229960:- | gene-YHR069C_PE2H4 | rna-NM_001179199.1_PE2H4 | cds-NP_011936.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:233579-234658:- | gene-YHR069C_S288C | rna-NM_001179199.1_S288C | cds-NP_011936.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:124764-125843:+ | gene-YHR069C_SA1 | rna-NM_001179199.1_SA1 | cds-NP_011936.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:221421-222500:- | gene-YHR069C_ThermosaccDry | rna-NM_001179199.1_ThermosaccDry | cds-NP_011936.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:229040-230119:- | gene-YHR069C_VR1 | rna-NM_001179199.1_VR1 | cds-NP_011936.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:212973-214052:- | gene-YHR069C_ZTW1 | rna-NM_001179199.1_ZTW1 | cds-NP_011936.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:218539-219618:- | gene-YHR069C_Sparadoxus | rna-NM_001179199.1_Sparadoxus | cds-NP_011936.1_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |