Gene name: RRP36
Reference locus (S288C): YOR287C
Gene biotype: protein_coding
Description: rRNA biogenesis protein RRP36; Component of 90S preribosomes; involved in early cleavages of the 35S pre-rRNA and in production of the 40S ribosomal subunit; Belongs to the RRP36 family
Top 10 interactors (score): UTP25 (0.999); KRR1 (0.999); CKB1 (0.999); BFR2 (0.999); RRP9 (0.999); CKA1 (0.999); BUD22 (0.999); HCA4 (0.999); UTP6 (0.998); SAS10 (0.998); ENP1 (0.998); UTP18 (0.998); ESF2 (0.998); DBP10 (0.997); NOP19 (0.997); KRI1 (0.997); RRP7 (0.997); ENP2 (0.996); UTP11 (0.996); NOP14 (0.995)
Homologues (species, bitscore): RRP36 (Homo sapiens, 58.9); Rrp36 (Mus musculus, 55.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:841744-842646:- | gene-YOR287C_AKU4011 | rna-NM_001183706.1_AKU4011 | cds-NP_014930.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:243705-244607:- | gene-YOR287C_BG1 | rna-NM_001183706.1_BG1 | cds-NP_014930.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:827176-828078:- | gene-YOR287C_Bruggeman | rna-NM_001183706.1_Bruggeman | cds-NP_014930.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:827847-828749:- | gene-YOR287C_CAT1 | rna-NM_001183706.1_CAT1 | cds-NP_014930.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:824762-825664:- | gene-YOR287C_CBS1585 | rna-NM_001183706.1_CBS1585 | cds-NP_014930.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:823408-824310:- | gene-YOR287C_CBS436 | rna-NM_001183706.1_CBS436 | cds-NP_014930.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:821615-822517:- | gene-YOR287C_CBS6412 | rna-NM_001183706.1_CBS6412 | cds-NP_014930.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:830473-831375:- | gene-YOR287C_CBS6413 | rna-NM_001183706.1_CBS6413 | cds-NP_014930.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:850726-851628:- | gene-YOR287C_CENPK1137D | rna-NM_001183706.1_CENPK1137D | cds-NP_014930.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:817871-818773:- | gene-YOR287C_EthanolRed | rna-NM_001183706.1_EthanolRed | cds-NP_014930.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:823270-824172:- | gene-YOR287C_FaliES1 | rna-NM_001183706.1_FaliES1 | cds-NP_014930.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:2743-3645:+ | gene-YOR287C_JAY291 | rna-NM_001183706.1_JAY291 | cds-NP_014930.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:831414-832316:- | gene-YOR287C_MUCL30387 | rna-NM_001183706.1_MUCL30387 | cds-NP_014930.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:839392-840294:- | gene-YOR287C_MUCL30388 | rna-NM_001183706.1_MUCL30388 | cds-NP_014930.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:832108-833010:- | gene-YOR287C_MUCL39482 | rna-NM_001183706.1_MUCL39482 | cds-NP_014930.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:841592-842494:- | gene-YOR287C_MUCL42920 | rna-NM_001183706.1_MUCL42920 | cds-NP_014930.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:850826-851728:- | gene-YOR287C_NCIM3186 | rna-NM_001183706.1_NCIM3186 | cds-NP_014930.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:832313-833215:- | gene-YOR287C_NCYC1407 | rna-NM_001183706.1_NCYC1407 | cds-NP_014930.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:831387-832289:- | gene-YOR287C_PE2H3 | rna-NM_001183706.1_PE2H3 | cds-NP_014930.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:841768-842670:- | gene-YOR287C_PE2H4 | rna-NM_001183706.1_PE2H4 | cds-NP_014930.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:850937-851839:- | gene-YOR287C_S288C | rna-NM_001183706.1_S288C | cds-NP_014930.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:260949-261851:- | gene-YOR287C_SA1 | rna-NM_001183706.1_SA1 | cds-NP_014930.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:822453-823355:- | gene-YOR287C_ThermosaccDry | rna-NM_001183706.1_ThermosaccDry | cds-NP_014930.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:885828-886730:- | gene-YOR287C_VR1 | rna-NM_001183706.1_VR1 | cds-NP_014930.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:555341-556243:- | gene-YOR287C_ZTW1 | rna-NM_001183706.1_ZTW1 | cds-NP_014930.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:828123-829025:- | gene-YOR287C_Sparadoxus | rna-NM_001183706.1_Sparadoxus | cds-NP_014930.1_Sparadoxus | 89.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |