Gene name: RRP3
Reference locus (S288C): YHR065C
Gene biotype: protein_coding
Description: ATP-dependent rRNA helicase RRP3; Protein involved in rRNA processing; required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA; homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity
Top 10 interactors (score): ESF1 (0.999); ERB1 (0.998); ROK1 (0.998); SAS10 (0.997); LCP5 (0.997); NOP14 (0.996); ECM16 (0.996); UTP13 (0.995); DBP8 (0.994); UTP25 (0.994); NOP56 (0.993); NOP58 (0.993); KRR1 (0.993); NOC4 (0.993); SOF1 (0.993); EMG1 (0.991); RRP5 (0.99); MTR4 (0.99); IMP3 (0.989); UTP14 (0.988)
Homologues (species, bitscore): DDX47 (Homo sapiens, 469.9); Ddx47 (Mus musculus, 468.4); ddx49 (Danio rerio, 323.2); ddx47 (Xenopus tropicalis, 470.7); CG9253 (Drosophila melanogaster, 453.4); T26G10.1 (Caenorhabditis elegans, 439.9); AT5G60990 (Arabidopsis thaliana, 426.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:213810-215315:- | gene-YHR065C_AKU4011 | rna-NM_001179195.1_AKU4011 | cds-NP_011932.2_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:134932-136437:- | gene-YHR065C_BG1 | rna-NM_001179195.1_BG1 | cds-NP_011932.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:221550-223055:- | gene-YHR065C_Bruggeman | rna-NM_001179195.1_Bruggeman | cds-NP_011932.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:216349-217854:- | gene-YHR065C_CAT1 | rna-NM_001179195.1_CAT1 | cds-NP_011932.2_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:212916-214421:- | gene-YHR065C_CBS1585 | rna-NM_001179195.1_CBS1585 | cds-NP_011932.2_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:210856-212361:- | gene-YHR065C_CBS436 | rna-NM_001179195.1_CBS436 | cds-NP_011932.2_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:213130-214635:- | gene-YHR065C_CBS6412 | rna-NM_001179195.1_CBS6412 | cds-NP_011932.2_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:213962-215467:- | gene-YHR065C_CBS6413 | rna-NM_001179195.1_CBS6413 | cds-NP_011932.2_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:220696-222201:- | gene-YHR065C_CENPK1137D | rna-NM_001179195.1_CENPK1137D | cds-NP_011932.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:213306-214811:- | gene-YHR065C_EthanolRed | rna-NM_001179195.1_EthanolRed | cds-NP_011932.2_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:214283-215788:- | gene-YHR065C_FaliES1 | rna-NM_001179195.1_FaliES1 | cds-NP_011932.2_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000280.1:1537-3042:+ | gene-YHR065C_JAY291 | rna-NM_001179195.1_JAY291 | cds-NP_011932.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:221302-222807:- | gene-YHR065C_MUCL30387 | rna-NM_001179195.1_MUCL30387 | cds-NP_011932.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:221187-222692:- | gene-YHR065C_MUCL30388 | rna-NM_001179195.1_MUCL30388 | cds-NP_011932.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:213183-214688:- | gene-YHR065C_MUCL39482 | rna-NM_001179195.1_MUCL39482 | cds-NP_011932.2_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:220092-221597:- | gene-YHR065C_MUCL42920 | rna-NM_001179195.1_MUCL42920 | cds-NP_011932.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:227414-228919:- | gene-YHR065C_NCIM3186 | rna-NM_001179195.1_NCIM3186 | cds-NP_011932.2_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:684824-686329:- | gene-YHR065C_NCYC1407 | rna-NM_001179195.1_NCYC1407 | cds-NP_011932.2_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:215387-216892:- | gene-YHR065C_PE2H3 | rna-NM_001179195.1_PE2H3 | cds-NP_011932.2_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:222834-224339:- | gene-YHR065C_PE2H4 | rna-NM_001179195.1_PE2H4 | cds-NP_011932.2_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:227532-229037:- | gene-YHR065C_S288C | rna-NM_001179195.1_S288C | cds-NP_011932.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:130385-131890:+ | gene-YHR065C_SA1 | rna-NM_001179195.1_SA1 | cds-NP_011932.2_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:215374-216879:- | gene-YHR065C_ThermosaccDry | rna-NM_001179195.1_ThermosaccDry | cds-NP_011932.2_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:222996-224501:- | gene-YHR065C_VR1 | rna-NM_001179195.1_VR1 | cds-NP_011932.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:206927-208432:- | gene-YHR065C_ZTW1 | rna-NM_001179195.1_ZTW1 | cds-NP_011932.2_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:212500-214005:- | gene-YHR065C_Sparadoxus | rna-NM_001179195.1_Sparadoxus | cds-NP_011932.2_Sparadoxus | 89.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |