Gene name: RRP17
Reference locus (S288C): YDR412W
Gene biotype: protein_coding
Description: Ribosomal RNA-processing protein 17; Component of the pre-60S pre-ribosomal particle; required for cell viability under standard (aerobic) conditions but not under anaerobic conditions; exonuclease required for 5' end processing of pre-60S ribosomal RNA
Top 10 interactors (score): NOP15 (0.995); EBP2 (0.989); RPF2 (0.979); NOC2 (0.972); ERB1 (0.967); YTM1 (0.966); BRX1 (0.962); NOP4 (0.96); RLP24 (0.952); RAT1 (0.942); RPF1 (0.939); CIC1 (0.933); UTP11 (0.931); NSA2 (0.931); RRP1 (0.929); RRS1 (0.913); RLP7 (0.908); SPB1 (0.907); FAF1 (0.907); CGR1 (0.904)
Homologues (species, bitscore): nol12 (Xenopus tropicalis, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1234846-1235553:+ | gene-YDR412W_AKU4011 | rna-NM_001180720.3_AKU4011 | cds-NP_010700.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:113329-114036:+ | gene-YDR412W_BG1 | rna-NM_001180720.3_BG1 | cds-NP_010700.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1265727-1266434:+ | gene-YDR412W_Bruggeman | rna-NM_001180720.3_Bruggeman | cds-NP_010700.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1244287-1244994:+ | gene-YDR412W_CAT1 | rna-NM_001180720.3_CAT1 | cds-NP_010700.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1229766-1230473:+ | gene-YDR412W_CBS1585 | rna-NM_001180720.3_CBS1585 | cds-NP_010700.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1248625-1249332:+ | gene-YDR412W_CBS436 | rna-NM_001180720.3_CBS436 | cds-NP_010700.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1225820-1226527:+ | gene-YDR412W_CBS6412 | rna-NM_001180720.3_CBS6412 | cds-NP_010700.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1247675-1248382:+ | gene-YDR412W_CBS6413 | rna-NM_001180720.3_CBS6413 | cds-NP_010700.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1293352-1294059:+ | gene-YDR412W_CENPK1137D | rna-NM_001180720.3_CENPK1137D | cds-NP_010700.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1239234-1239941:+ | gene-YDR412W_EthanolRed | rna-NM_001180720.3_EthanolRed | cds-NP_010700.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1242541-1243248:+ | gene-YDR412W_FaliES1 | rna-NM_001180720.3_FaliES1 | cds-NP_010700.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000445.1:1358-2065:- | gene-YDR412W_1_JAY291 | Unknown | Unknown | 100.0 | 100.0 | Verified | 2 | 2 | 1 | Unknown | Unknown | Unknown | Unknown | Unknown |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:12265-12972:- | gene-YDR412W_JAY291 | rna-NM_001180720.3_JAY291 | cds-NP_010700.3_JAY291 | 100.0 | 100.0 | Verified | 2 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1249289-1249996:+ | gene-YDR412W_MUCL30387 | rna-NM_001180720.3_MUCL30387 | cds-NP_010700.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1231395-1232102:+ | gene-YDR412W_MUCL30388 | rna-NM_001180720.3_MUCL30388 | cds-NP_010700.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1221094-1221801:+ | gene-YDR412W_MUCL39482 | rna-NM_001180720.3_MUCL39482 | cds-NP_010700.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1163525-1164232:+ | gene-YDR412W_MUCL42920 | rna-NM_001180720.3_MUCL42920 | cds-NP_010700.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1294616-1295323:+ | gene-YDR412W_NCIM3186 | rna-NM_001180720.3_NCIM3186 | cds-NP_010700.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1235066-1235773:+ | gene-YDR412W_NCYC1407 | rna-NM_001180720.3_NCYC1407 | cds-NP_010700.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1245198-1245905:+ | gene-YDR412W_PE2H3 | rna-NM_001180720.3_PE2H3 | cds-NP_010700.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1250766-1251473:+ | gene-YDR412W_PE2H4 | rna-NM_001180720.3_PE2H4 | cds-NP_010700.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1294693-1295400:+ | gene-YDR412W_S288C | rna-NM_001180720.3_S288C | cds-NP_010700.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:12387-13094:- | gene-YDR412W_SA1 | rna-NM_001180720.3_SA1 | cds-NP_010700.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1246803-1247510:+ | gene-YDR412W_ThermosaccDry | rna-NM_001180720.3_ThermosaccDry | cds-NP_010700.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1262005-1262712:+ | gene-YDR412W_VR1 | rna-NM_001180720.3_VR1 | cds-NP_010700.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:289615-290322:+ | gene-YDR412W_ZTW1 | rna-NM_001180720.3_ZTW1 | cds-NP_010700.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1242030-1242737:+ | gene-YDR412W_Sparadoxus | rna-NM_001180720.3_Sparadoxus | cds-NP_010700.3_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |