Gene name: RRP15
Reference locus (S288C): YPR143W
Gene biotype: protein_coding
Description: Nucleolar protein; constituent of pre-60S ribosomal particles; required for proper processing of the 27S pre-rRNA at the A3 and B1 sites to yield mature 5.8S and 25S rRNAs; Belongs to the RRP15 family
Top 10 interactors (score): NSA1 (0.999); RRP1 (0.999); RLP24 (0.999); MAK16 (0.999); SSF1 (0.999); EBP2 (0.999); RRP14 (0.999); CIC1 (0.999); NOP4 (0.999); NOG1 (0.999); RPF1 (0.999); NOP15 (0.999); HAS1 (0.999); RLP7 (0.998); SPB1 (0.998); RPF2 (0.998); RRS1 (0.998); NOP16 (0.998); BRX1 (0.998); NOP7 (0.998)
Homologues (species, bitscore): rrp15 (Danio rerio, 52.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:784099-784887:+ | gene-YPR143W_AKU4011 | rna-NM_001184240.1_AKU4011 | cds-NP_015469.1_AKU4011 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:112477-113268:- | gene-YPR143W_BG1 | rna-NM_001184240.1_BG1 | cds-NP_015469.1_BG1 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:864739-865524:+ | gene-YPR143W_Bruggeman | rna-NM_001184240.1_Bruggeman | cds-NP_015469.1_Bruggeman | 95.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:906664-907455:+ | gene-YPR143W_CAT1 | rna-NM_001184240.1_CAT1 | cds-NP_015469.1_CAT1 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:788355-789143:+ | gene-YPR143W_CBS1585 | rna-NM_001184240.1_CBS1585 | cds-NP_015469.1_CBS1585 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:802818-803570:+ | gene-YPR143W_CBS436 | rna-NM_001184240.1_CBS436 | cds-NP_015469.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:791079-791870:+ | gene-YPR143W_CBS6412 | rna-NM_001184240.1_CBS6412 | cds-NP_015469.1_CBS6412 | 94.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:785801-786592:+ | gene-YPR143W_CBS6413 | rna-NM_001184240.1_CBS6413 | cds-NP_015469.1_CBS6413 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:818321-819073:+ | gene-YPR143W_CENPK1137D | rna-NM_001184240.1_CENPK1137D | cds-NP_015469.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1106265-1107053:+ | gene-YPR143W_EthanolRed | rna-NM_001184240.1_EthanolRed | cds-NP_015469.1_EthanolRed | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:785812-786600:+ | gene-YPR143W_FaliES1 | rna-NM_001184240.1_FaliES1 | cds-NP_015469.1_FaliES1 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000036.1:43087-43878:+ | gene-YPR143W_JAY291 | rna-NM_001184240.1_JAY291 | cds-NP_015469.1_JAY291 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:804930-805715:+ | gene-YPR143W_MUCL30387 | rna-NM_001184240.1_MUCL30387 | cds-NP_015469.1_MUCL30387 | 95.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:804895-805680:+ | gene-YPR143W_MUCL30388 | rna-NM_001184240.1_MUCL30388 | cds-NP_015469.1_MUCL30388 | 95.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:780863-781654:+ | gene-YPR143W_MUCL39482 | rna-NM_001184240.1_MUCL39482 | cds-NP_015469.1_MUCL39482 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:844650-845435:+ | gene-YPR143W_MUCL42920 | rna-NM_001184240.1_MUCL42920 | cds-NP_015469.1_MUCL42920 | 95.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:818306-819058:+ | gene-YPR143W_NCIM3186 | rna-NM_001184240.1_NCIM3186 | cds-NP_015469.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:789456-790244:+ | gene-YPR143W_NCYC1407 | rna-NM_001184240.1_NCYC1407 | cds-NP_015469.1_NCYC1407 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:796176-796967:+ | gene-YPR143W_PE2H3 | rna-NM_001184240.1_PE2H3 | cds-NP_015469.1_PE2H3 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:795824-796615:+ | gene-YPR143W_PE2H4 | rna-NM_001184240.1_PE2H4 | cds-NP_015469.1_PE2H4 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:818323-819075:+ | gene-YPR143W_S288C | rna-NM_001184240.1_S288C | cds-NP_015469.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:110201-110992:+ | gene-YPR143W_SA1 | rna-NM_001184240.1_SA1 | cds-NP_015469.1_SA1 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:785257-786045:+ | gene-YPR143W_ThermosaccDry | rna-NM_001184240.1_ThermosaccDry | cds-NP_015469.1_ThermosaccDry | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:807078-807869:+ | gene-YPR143W_VR1 | rna-NM_001184240.1_VR1 | cds-NP_015469.1_VR1 | 95.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:789001-789752:+ | gene-YPR143W_ZTW1 | rna-NM_001184240.1_ZTW1 | cds-NP_015469.1_ZTW1 | 99.2 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:791114-791857:+ | gene-YPR143W_Sparadoxus | rna-NM_001184240.1_Sparadoxus | cds-NP_015469.1_Sparadoxus | 86.2 | 98.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |