Gene name: RRP14
Reference locus (S288C): YKL082C
Gene biotype: protein_coding
Description: Essential protein, constituent of 66S pre-ribosomal particles; interacts with proteins involved in ribosomal biogenesis and cell polarity; member of the SURF-6 family; Belongs to the SURF6 family
Top 10 interactors (score): RRP15 (0.999); MAK16 (0.999); NOP15 (0.999); SSF1 (0.999); EBP2 (0.999); NOP7 (0.998); UTP11 (0.997); RPF1 (0.997); NOP16 (0.997); NOP4 (0.997); FAF1 (0.997); RRP1 (0.996); DBP9 (0.995); SPB1 (0.995); NOG1 (0.995); RLP24 (0.994); RRP36 (0.993); BRX1 (0.992); CGR1 (0.991); LCP5 (0.991)
Homologues (species, bitscore): SURF6 (Homo sapiens, 63.5); Surf6 (Mus musculus, 60.1); surf6 (Danio rerio, 63.2); surf6 (Xenopus tropicalis, 62.8); Surf6 (Drosophila melanogaster, 61.6); AT5G05210 (Arabidopsis thaliana, 74.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:267586-268890:- | gene-YKL082C_AKU4011 | rna-NM_001179648.1_AKU4011 | cds-NP_012841.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:244761-246065:- | gene-YKL082C_BG1 | rna-NM_001179648.1_BG1 | cds-NP_012841.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:285752-287056:- | gene-YKL082C_Bruggeman | rna-NM_001179648.1_Bruggeman | cds-NP_012841.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:280555-281859:- | gene-YKL082C_CAT1 | rna-NM_001179648.1_CAT1 | cds-NP_012841.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:279827-281131:- | gene-YKL082C_CBS1585 | rna-NM_001179648.1_CBS1585 | cds-NP_012841.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:278419-279723:- | gene-YKL082C_CBS436 | rna-NM_001179648.1_CBS436 | cds-NP_012841.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:264453-265757:- | gene-YKL082C_CBS6412 | rna-NM_001179648.1_CBS6412 | cds-NP_012841.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:280281-281585:- | gene-YKL082C_CBS6413 | rna-NM_001179648.1_CBS6413 | cds-NP_012841.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:280667-281971:- | gene-YKL082C_CENPK1137D | rna-NM_001179648.1_CENPK1137D | cds-NP_012841.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:278277-279581:- | gene-YKL082C_EthanolRed | rna-NM_001179648.1_EthanolRed | cds-NP_012841.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:279089-280393:- | gene-YKL082C_FaliES1 | rna-NM_001179648.1_FaliES1 | cds-NP_012841.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:101415-102719:- | gene-YKL082C_JAY291 | rna-NM_001179648.1_JAY291 | cds-NP_012841.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:287551-288855:- | gene-YKL082C_MUCL30387 | rna-NM_001179648.1_MUCL30387 | cds-NP_012841.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:281947-283251:- | gene-YKL082C_MUCL30388 | rna-NM_001179648.1_MUCL30388 | cds-NP_012841.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:279612-280916:- | gene-YKL082C_MUCL39482 | rna-NM_001179648.1_MUCL39482 | cds-NP_012841.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:284243-285547:- | gene-YKL082C_MUCL42920 | rna-NM_001179648.1_MUCL42920 | cds-NP_012841.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:281014-282318:- | gene-YKL082C_NCIM3186 | rna-NM_001179648.1_NCIM3186 | cds-NP_012841.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:279806-281110:- | gene-YKL082C_NCYC1407 | rna-NM_001179648.1_NCYC1407 | cds-NP_012841.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:286895-288199:- | gene-YKL082C_PE2H3 | rna-NM_001179648.1_PE2H3 | cds-NP_012841.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:283182-284486:- | gene-YKL082C_PE2H4 | rna-NM_001179648.1_PE2H4 | cds-NP_012841.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:281025-282329:- | gene-YKL082C_S288C | rna-NM_001179648.1_S288C | cds-NP_012841.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:197155-198459:- | gene-YKL082C_SA1 | rna-NM_001179648.1_SA1 | cds-NP_012841.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:279798-281102:- | gene-YKL082C_ThermosaccDry | rna-NM_001179648.1_ThermosaccDry | cds-NP_012841.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:279155-280459:- | gene-YKL082C_VR1 | rna-NM_001179648.1_VR1 | cds-NP_012841.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:278359-279663:- | gene-YKL082C_ZTW1 | rna-NM_001179648.1_ZTW1 | cds-NP_012841.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:295431-296735:- | gene-YKL082C_Sparadoxus | rna-NM_001179648.1_Sparadoxus | cds-NP_012841.1_Sparadoxus | 89.6 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |