Gene name: RRP12
Reference locus (S288C): YPL012W
Gene biotype: protein_coding
Description: Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; has a role in nuclear import in association with Pse1p; also plays a role in the cell cycle and the DNA damage response; contains HEAT-repeats
Top 10 interactors (score): ECM16 (0.999); ROK1 (0.999); NOC3 (0.999); NOP56 (0.999); MRD1 (0.999); MAK21 (0.999); DIP2 (0.999); RRP9 (0.999); KRE33 (0.999); NOP7 (0.999); ENP2 (0.999); UTP10 (0.999); NOP14 (0.999); UTP21 (0.999); UTP20 (0.999); ERB1 (0.999); NOP9 (0.999); NUG1 (0.999); NOC4 (0.999); PWP2 (0.999)
Homologues (species, bitscore): RRP12 (Homo sapiens, 333.6); Rrp12 (Mus musculus, 311.2); rrp12 (Danio rerio, 349.4); rrp12 (Xenopus tropicalis, 306.2); CG2691 (Drosophila melanogaster, 162.2); Y46E12BL.2 (Caenorhabditis elegans, 163.3); AT2G34357 (Arabidopsis thaliana, 228.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:501212-504898:+ | gene-YPL012W_AKU4011 | rna-NM_001183826.1_AKU4011 | cds-NP_015313.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:392322-396008:- | gene-YPL012W_BG1 | rna-NM_001183826.1_BG1 | cds-NP_015313.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:578149-581835:+ | gene-YPL012W_Bruggeman | rna-NM_001183826.1_Bruggeman | cds-NP_015313.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:620613-624299:+ | gene-YPL012W_CAT1 | rna-NM_001183826.1_CAT1 | cds-NP_015313.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:505374-509060:+ | gene-YPL012W_CBS1585 | rna-NM_001183826.1_CBS1585 | cds-NP_015313.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:519420-523106:+ | gene-YPL012W_CBS436 | rna-NM_001183826.1_CBS436 | cds-NP_015313.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:509126-512812:+ | gene-YPL012W_CBS6412 | rna-NM_001183826.1_CBS6412 | cds-NP_015313.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:501849-505535:+ | gene-YPL012W_CBS6413 | rna-NM_001183826.1_CBS6413 | cds-NP_015313.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:529730-533416:+ | gene-YPL012W_CENPK1137D | rna-NM_001183826.1_CENPK1137D | cds-NP_015313.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:499633-503319:+ | gene-YPL012W_EthanolRed | rna-NM_001183826.1_EthanolRed | cds-NP_015313.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:507463-511149:+ | gene-YPL012W_FaliES1 | rna-NM_001183826.1_FaliES1 | cds-NP_015313.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:116013-119699:+ | gene-YPL012W_JAY291 | rna-NM_001183826.1_JAY291 | cds-NP_015313.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:519099-522785:+ | gene-YPL012W_MUCL30387 | rna-NM_001183826.1_MUCL30387 | cds-NP_015313.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:518206-521892:+ | gene-YPL012W_MUCL30388 | rna-NM_001183826.1_MUCL30388 | cds-NP_015313.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:498614-502300:+ | gene-YPL012W_MUCL39482 | rna-NM_001183826.1_MUCL39482 | cds-NP_015313.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:557690-561376:+ | gene-YPL012W_MUCL42920 | rna-NM_001183826.1_MUCL42920 | cds-NP_015313.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:529706-533392:+ | gene-YPL012W_NCIM3186 | rna-NM_001183826.1_NCIM3186 | cds-NP_015313.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:505888-509574:+ | gene-YPL012W_NCYC1407 | rna-NM_001183826.1_NCYC1407 | cds-NP_015313.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:512541-516227:+ | gene-YPL012W_PE2H3 | rna-NM_001183826.1_PE2H3 | cds-NP_015313.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:512156-515842:+ | gene-YPL012W_PE2H4 | rna-NM_001183826.1_PE2H4 | cds-NP_015313.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:529723-533409:+ | gene-YPL012W_S288C | rna-NM_001183826.1_S288C | cds-NP_015313.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:26451-30137:+ | gene-YPL012W_SA1 | rna-NM_001183826.1_SA1 | cds-NP_015313.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:507262-510948:+ | gene-YPL012W_ThermosaccDry | rna-NM_001183826.1_ThermosaccDry | cds-NP_015313.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:522641-526327:+ | gene-YPL012W_VR1 | rna-NM_001183826.1_VR1 | cds-NP_015313.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:506547-510233:+ | gene-YPL012W_ZTW1 | rna-NM_001183826.1_ZTW1 | cds-NP_015313.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:506427-510110:+ | gene-YPL012W_Sparadoxus | rna-NM_001183826.1_Sparadoxus | cds-NP_015313.1_Sparadoxus | 90.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |