Gene name: RRP1
Reference locus (S288C): YDR087C
Gene biotype: protein_coding
Description: Ribosomal RNA-processing protein 1; Essential evolutionarily conserved nucleolar protein; necessary for biogenesis of 60S ribosomal subunits and for processing of pre-rRNAs to mature rRNA; associated with several distinct 66S pre-ribosomal particles; Belongs to the RRP1 family
Top 10 interactors (score): CIC1 (0.999); SPB1 (0.999); YTM1 (0.999); RPF1 (0.999); NOP2 (0.999); RPF2 (0.999); NOP15 (0.999); HAS1 (0.999); NSA2 (0.999); RLP24 (0.999); NSA1 (0.999); NUG1 (0.999); SSF1 (0.999); EBP2 (0.999); ERB1 (0.999); NIP7 (0.999); NOP7 (0.999); RRP8 (0.999); NOC3 (0.999); MRT4 (0.999)
Homologues (species, bitscore): RRP1B (Homo sapiens, 102.8); Rrp1 (Mus musculus, 98.2); rrp1 (Danio rerio, 75.9); rrp1b (Xenopus tropicalis, 95.1); Nnp-1 (Drosophila melanogaster, 89.7); C47E12.7 (Caenorhabditis elegans, 79.7); AT5G20600 (Arabidopsis thaliana, 51.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:595024-595860:- | gene-YDR087C_AKU4011 | rna-NM_001180395.3_AKU4011 | cds-NP_010372.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:529456-530292:+ | gene-YDR087C_BG1 | rna-NM_001180395.3_BG1 | cds-NP_010372.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:627256-628092:- | gene-YDR087C_Bruggeman | rna-NM_001180395.3_Bruggeman | cds-NP_010372.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:611941-612777:- | gene-YDR087C_CAT1 | rna-NM_001180395.3_CAT1 | cds-NP_010372.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:586045-586881:- | gene-YDR087C_CBS1585 | rna-NM_001180395.3_CBS1585 | cds-NP_010372.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:611060-611896:- | gene-YDR087C_CBS436 | rna-NM_001180395.3_CBS436 | cds-NP_010372.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:582458-583294:- | gene-YDR087C_CBS6412 | rna-NM_001180395.3_CBS6412 | cds-NP_010372.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:610990-611826:- | gene-YDR087C_CBS6413 | rna-NM_001180395.3_CBS6413 | cds-NP_010372.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:616510-617346:- | gene-YDR087C_CENPK1137D | rna-NM_001180395.3_CENPK1137D | cds-NP_010372.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:596815-597651:- | gene-YDR087C_EthanolRed | rna-NM_001180395.3_EthanolRed | cds-NP_010372.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:603609-604445:- | gene-YDR087C_FaliES1 | rna-NM_001180395.3_FaliES1 | cds-NP_010372.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:26823-27659:+ | gene-YDR087C_JAY291 | rna-NM_001180395.3_JAY291 | cds-NP_010372.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:611873-612709:- | gene-YDR087C_MUCL30387 | rna-NM_001180395.3_MUCL30387 | cds-NP_010372.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:602185-603021:- | gene-YDR087C_MUCL30388 | rna-NM_001180395.3_MUCL30388 | cds-NP_010372.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:587415-588251:- | gene-YDR087C_MUCL39482 | rna-NM_001180395.3_MUCL39482 | cds-NP_010372.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:518869-519705:- | gene-YDR087C_MUCL42920 | rna-NM_001180395.3_MUCL42920 | cds-NP_010372.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:617393-618229:- | gene-YDR087C_NCIM3186 | rna-NM_001180395.3_NCIM3186 | cds-NP_010372.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:586322-587158:- | gene-YDR087C_NCYC1407 | rna-NM_001180395.3_NCYC1407 | cds-NP_010372.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:605792-606628:- | gene-YDR087C_PE2H3 | rna-NM_001180395.3_PE2H3 | cds-NP_010372.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:605097-605933:- | gene-YDR087C_PE2H4 | rna-NM_001180395.3_PE2H4 | cds-NP_010372.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:617470-618306:- | gene-YDR087C_S288C | rna-NM_001180395.3_S288C | cds-NP_010372.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:27031-27867:+ | gene-YDR087C_SA1 | rna-NM_001180395.3_SA1 | cds-NP_010372.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:603139-603975:- | gene-YDR087C_ThermosaccDry | rna-NM_001180395.3_ThermosaccDry | cds-NP_010372.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:615691-616527:- | gene-YDR087C_VR1 | rna-NM_001180395.3_VR1 | cds-NP_010372.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:600722-601558:- | gene-YDR087C_ZTW1 | rna-NM_001180395.3_ZTW1 | cds-NP_010372.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:605448-606290:- | gene-YDR087C_Sparadoxus | rna-NM_001180395.3_Sparadoxus | cds-NP_010372.3_Sparadoxus | 90.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |