Gene name: RRN9
Reference locus (S288C): YMR270C
Gene biotype: protein_coding
Description: RNA polymerase I-specific transcription initiation factor RRN9; Protein involved in promoting high level transcription of rDNA; subunit of UAF (upstream activation factor) for RNA polymerase I
Top 10 interactors (score): RRN5 (0.999); RRN10 (0.999); RRN7 (0.998); UAF30 (0.996); RRN6 (0.992); RRN11 (0.989); SPT15 (0.973); RRN3 (0.78); RPA190 (0.744); RPA12 (0.695); HMO1 (0.657); HHT1 (0.654); HHT2 (0.623); CDC14 (0.589); FOB1 (0.572); HHF1 (0.563); RPA135 (0.526); SIR2 (0.47); CDC8 (0.402)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:844781-845878:- | gene-YMR270C_AKU4011 | rna-NM_001182777.1_AKU4011 | cds-NP_013997.1_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:108515-109612:+ | gene-YMR270C_BG1 | rna-NM_001182777.1_BG1 | cds-NP_013997.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:789993-791090:- | gene-YMR270C_Bruggeman | rna-NM_001182777.1_Bruggeman | cds-NP_013997.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:793019-794116:- | gene-YMR270C_CAT1 | rna-NM_001182777.1_CAT1 | cds-NP_013997.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:777031-778128:- | gene-YMR270C_CBS1585 | rna-NM_001182777.1_CBS1585 | cds-NP_013997.1_CBS1585 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:798962-800059:- | gene-YMR270C_CBS436 | rna-NM_001182777.1_CBS436 | cds-NP_013997.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:888586-889683:- | gene-YMR270C_CBS6412 | rna-NM_001182777.1_CBS6412 | cds-NP_013997.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:776133-777230:- | gene-YMR270C_CBS6413 | rna-NM_001182777.1_CBS6413 | cds-NP_013997.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:799734-800831:- | gene-YMR270C_CENPK1137D | rna-NM_001182777.1_CENPK1137D | cds-NP_013997.1_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:837469-838566:- | gene-YMR270C_EthanolRed | rna-NM_001182777.1_EthanolRed | cds-NP_013997.1_EthanolRed | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:783496-784593:- | gene-YMR270C_FaliES1 | rna-NM_001182777.1_FaliES1 | cds-NP_013997.1_FaliES1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:1940-3037:+ | gene-YMR270C_JAY291 | rna-NM_001182777.1_JAY291 | cds-NP_013997.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:783819-784916:- | gene-YMR270C_MUCL30387 | rna-NM_001182777.1_MUCL30387 | cds-NP_013997.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:793210-794307:- | gene-YMR270C_MUCL30388 | rna-NM_001182777.1_MUCL30388 | cds-NP_013997.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:778119-779216:- | gene-YMR270C_MUCL39482 | rna-NM_001182777.1_MUCL39482 | cds-NP_013997.1_MUCL39482 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:786167-787264:- | gene-YMR270C_MUCL42920 | rna-NM_001182777.1_MUCL42920 | cds-NP_013997.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:805280-806377:- | gene-YMR270C_NCIM3186 | rna-NM_001182777.1_NCIM3186 | cds-NP_013997.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:777743-778840:- | gene-YMR270C_NCYC1407 | rna-NM_001182777.1_NCYC1407 | cds-NP_013997.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:787735-788832:- | gene-YMR270C_PE2H3 | rna-NM_001182777.1_PE2H3 | cds-NP_013997.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:788807-789904:- | gene-YMR270C_PE2H4 | rna-NM_001182777.1_PE2H4 | cds-NP_013997.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:805326-806423:- | gene-YMR270C_S288C | rna-NM_001182777.1_S288C | cds-NP_013997.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:2012-3109:+ | gene-YMR270C_SA1 | rna-NM_001182777.1_SA1 | cds-NP_013997.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:779665-780762:- | gene-YMR270C_ThermosaccDry | rna-NM_001182777.1_ThermosaccDry | cds-NP_013997.1_ThermosaccDry | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:792275-793372:- | gene-YMR270C_VR1 | rna-NM_001182777.1_VR1 | cds-NP_013997.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:194865-195962:- | gene-YMR270C_ZTW1 | rna-NM_001182777.1_ZTW1 | cds-NP_013997.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:798080-799170:- | gene-YMR270C_Sparadoxus | rna-NM_001182777.1_Sparadoxus | cds-NP_013997.1_Sparadoxus | 89.7 | 99.3 | Verified | 1 | 1 | 0 | False | False | False | True | False |