Gene name: RRN7
Reference locus (S288C): YJL025W
Gene biotype: protein_coding
Description: RNA polymerase I-specific transcription initiation factor RRN7; Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcription of 35S rRNA genes by RNA polymerase I and is composed of Rrn6p, Rrn7p, and Rrn11p; Belongs to the RRN7/TAF1B family
Top 10 interactors (score): RRN11 (0.999); RRN6 (0.999); RRN3 (0.998); RRN9 (0.998); SPT15 (0.996); RRN5 (0.995); RRN10 (0.991); UAF30 (0.984); RPA49 (0.982); RPA135 (0.981); RPA12 (0.98); RPA190 (0.979); RPC10 (0.971); RPA43 (0.967); RPB5 (0.963); RPB10 (0.959); RPO26 (0.956); RPB8 (0.952); RPC19 (0.939); RPA34 (0.923)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:376922-378466:+ | gene-YJL025W_AKU4011 | rna-NM_001181459.1_AKU4011 | cds-NP_012509.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:235645-237189:- | gene-YJL025W_BG1 | rna-NM_001181459.1_BG1 | cds-NP_012509.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:391123-392667:+ | gene-YJL025W_Bruggeman | rna-NM_001181459.1_Bruggeman | cds-NP_012509.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:395074-396618:+ | gene-YJL025W_CAT1 | rna-NM_001181459.1_CAT1 | cds-NP_012509.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:388595-390139:+ | gene-YJL025W_CBS1585 | rna-NM_001181459.1_CBS1585 | cds-NP_012509.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:406946-408490:+ | gene-YJL025W_CBS436 | rna-NM_001181459.1_CBS436 | cds-NP_012509.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:377184-378728:+ | gene-YJL025W_CBS6412 | rna-NM_001181459.1_CBS6412 | cds-NP_012509.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:379065-380609:+ | gene-YJL025W_CBS6413 | rna-NM_001181459.1_CBS6413 | cds-NP_012509.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:376388-377932:+ | gene-YJL025W_CENPK1137D | rna-NM_001181459.1_CENPK1137D | cds-NP_012509.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:380140-381684:+ | gene-YJL025W_EthanolRed | rna-NM_001181459.1_EthanolRed | cds-NP_012509.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:392588-394132:+ | gene-YJL025W_FaliES1 | rna-NM_001181459.1_FaliES1 | cds-NP_012509.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:21299-22843:- | gene-YJL025W_JAY291 | rna-NM_001181459.1_JAY291 | cds-NP_012509.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:391367-392911:+ | gene-YJL025W_MUCL30387 | rna-NM_001181459.1_MUCL30387 | cds-NP_012509.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:387509-389053:+ | gene-YJL025W_MUCL30388 | rna-NM_001181459.1_MUCL30388 | cds-NP_012509.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:381912-383456:+ | gene-YJL025W_MUCL39482 | rna-NM_001181459.1_MUCL39482 | cds-NP_012509.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:387254-388798:+ | gene-YJL025W_MUCL42920 | rna-NM_001181459.1_MUCL42920 | cds-NP_012509.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:393946-395490:+ | gene-YJL025W_NCIM3186 | rna-NM_001181459.1_NCIM3186 | cds-NP_012509.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:379860-381404:+ | gene-YJL025W_NCYC1407 | rna-NM_001181459.1_NCYC1407 | cds-NP_012509.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:391935-393479:+ | gene-YJL025W_PE2H3 | rna-NM_001181459.1_PE2H3 | cds-NP_012509.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:391581-393125:+ | gene-YJL025W_PE2H4 | rna-NM_001181459.1_PE2H4 | cds-NP_012509.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:393967-395511:+ | gene-YJL025W_S288C | rna-NM_001181459.1_S288C | cds-NP_012509.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:189501-191045:+ | gene-YJL025W_SA1 | rna-NM_001181459.1_SA1 | cds-NP_012509.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:386247-387791:+ | gene-YJL025W_ThermosaccDry | rna-NM_001181459.1_ThermosaccDry | cds-NP_012509.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:388093-389637:+ | gene-YJL025W_VR1 | rna-NM_001181459.1_VR1 | cds-NP_012509.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:366918-368461:+ | gene-YJL025W_ZTW1 | rna-NM_001181459.1_ZTW1 | cds-NP_012509.1_ZTW1 | 99.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:392154-393701:+ | gene-YJL025W_Sparadoxus | rna-NM_001181459.1_Sparadoxus | cds-NP_012509.1_Sparadoxus | 88.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |