Gene name: RRN6
Reference locus (S288C): YBL014C
Gene biotype: protein_coding
Description: RNA polymerase I-specific transcription initiation factor RRN6; Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcription of 35S rRNA genes by RNA polymerase I and is composed of Rrn6p, Rrn7p, and Rrn11p
Top 10 interactors (score): RRN7 (0.999); RRN11 (0.999); RRN3 (0.994); RRN5 (0.993); RRN9 (0.992); RRN10 (0.988); SPT15 (0.988); UAF30 (0.98); RPC19 (0.963); RPA12 (0.931); RPA49 (0.908); RPC10 (0.908); RPA190 (0.903); RPA135 (0.854); RPB8 (0.852); RPB5 (0.851); RPA34 (0.836); RPO26 (0.831); RPA43 (0.827); RPB10 (0.826)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:193168-195852:- | gene-YBL014C_AKU4011 | rna-NM_001178254.2_AKU4011 | cds-NP_009539.2_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:183507-186191:- | gene-YBL014C_BG1 | rna-NM_001178254.2_BG1 | cds-NP_009539.2_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:193805-196489:- | gene-YBL014C_Bruggeman | rna-NM_001178254.2_Bruggeman | cds-NP_009539.2_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:196366-199050:- | gene-YBL014C_CAT1 | rna-NM_001178254.2_CAT1 | cds-NP_009539.2_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:185483-188167:- | gene-YBL014C_CBS1585 | rna-NM_001178254.2_CBS1585 | cds-NP_009539.2_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:193680-196364:- | gene-YBL014C_CBS436 | rna-NM_001178254.2_CBS436 | cds-NP_009539.2_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:283956-286640:- | gene-YBL014C_CBS6412 | rna-NM_001178254.2_CBS6412 | cds-NP_009539.2_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:190804-193488:- | gene-YBL014C_CBS6413 | rna-NM_001178254.2_CBS6413 | cds-NP_009539.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:192831-195518:- | gene-YBL014C_CENPK1137D | rna-NM_001178254.2_CENPK1137D | cds-NP_009539.2_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:320378-323062:- | gene-YBL014C_EthanolRed | rna-NM_001178254.2_EthanolRed | cds-NP_009539.2_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:207979-210663:- | gene-YBL014C_FaliES1 | rna-NM_001178254.2_FaliES1 | cds-NP_009539.2_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000048.1:86420-89104:+ | gene-YBL014C_JAY291 | rna-NM_001178254.2_JAY291 | cds-NP_009539.2_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:194442-197126:- | gene-YBL014C_MUCL30387 | rna-NM_001178254.2_MUCL30387 | cds-NP_009539.2_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:194412-197096:- | gene-YBL014C_MUCL30388 | rna-NM_001178254.2_MUCL30388 | cds-NP_009539.2_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:185419-188103:- | gene-YBL014C_MUCL39482 | rna-NM_001178254.2_MUCL39482 | cds-NP_009539.2_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:192848-195532:- | gene-YBL014C_MUCL42920 | rna-NM_001178254.2_MUCL42920 | cds-NP_009539.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:198861-201545:- | gene-YBL014C_NCIM3186 | rna-NM_001178254.2_NCIM3186 | cds-NP_009539.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:186568-189252:- | gene-YBL014C_NCYC1407 | rna-NM_001178254.2_NCYC1407 | cds-NP_009539.2_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:198753-201437:- | gene-YBL014C_PE2H3 | rna-NM_001178254.2_PE2H3 | cds-NP_009539.2_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:196397-199081:- | gene-YBL014C_PE2H4 | rna-NM_001178254.2_PE2H4 | cds-NP_009539.2_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:199064-201748:- | gene-YBL014C_S288C | rna-NM_001178254.2_S288C | cds-NP_009539.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000037.1:95119-97803:+ | gene-YBL014C_SA1 | rna-NM_001178254.2_SA1 | cds-NP_009539.2_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:207934-210618:- | gene-YBL014C_ThermosaccDry | rna-NM_001178254.2_ThermosaccDry | cds-NP_009539.2_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:190091-192775:- | gene-YBL014C_VR1 | rna-NM_001178254.2_VR1 | cds-NP_009539.2_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:184151-186835:- | gene-YBL014C_ZTW1 | rna-NM_001178254.2_ZTW1 | cds-NP_009539.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:219767-222448:- | gene-YBL014C_Sparadoxus | rna-NM_001178254.2_Sparadoxus | cds-NP_009539.2_Sparadoxus | 87.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |