Gene name: RRN5
Reference locus (S288C): YLR141W
Gene biotype: protein_coding
Description: Rna polymerase i-specific transcription initiation factor rrn5; Protein involved in transcription of rDNA by RNA polymerase I; transcription factor, member of UAF (upstream activation factor) family along with Rrn9p and Rrn10p
Top 10 interactors (score): RRN9 (0.999); RRN10 (0.999); UAF30 (0.999); RRN7 (0.995); RRN6 (0.993); RRN11 (0.988); RRN3 (0.947); SPT15 (0.817); HHT1 (0.754); HHT2 (0.747); RPA190 (0.722); HMO1 (0.691); RMP1 (0.62); FOB1 (0.62); NOP53 (0.618); HHF1 (0.574); TRI1 (0.527); DPH6 (0.525); CDC14 (0.51); SPC25 (0.473)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:406179-407252:+ | gene-YLR141W_AKU4011 | rna-NM_001182028.1_AKU4011 | cds-NP_013242.1_AKU4011 | 97.6 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:369943-371025:+ | gene-YLR141W_BG1 | rna-NM_001182028.1_BG1 | cds-NP_013242.1_BG1 | 98.8 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:418047-419147:+ | gene-YLR141W_Bruggeman | rna-NM_001182028.1_Bruggeman | cds-NP_013242.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:417453-418535:+ | gene-YLR141W_CAT1 | rna-NM_001182028.1_CAT1 | cds-NP_013242.1_CAT1 | 98.7 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:413322-414395:+ | gene-YLR141W_CBS1585 | rna-NM_001182028.1_CBS1585 | cds-NP_013242.1_CBS1585 | 97.6 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:403543-404634:+ | gene-YLR141W_CBS436 | rna-NM_001182028.1_CBS436 | cds-NP_013242.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:411740-412813:+ | gene-YLR141W_CBS6412 | rna-NM_001182028.1_CBS6412 | cds-NP_013242.1_CBS6412 | 97.6 | 98.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:413587-414660:+ | gene-YLR141W_CBS6413 | rna-NM_001182028.1_CBS6413 | cds-NP_013242.1_CBS6413 | 97.6 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:408703-409794:+ | gene-YLR141W_CENPK1137D | rna-NM_001182028.1_CENPK1137D | cds-NP_013242.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:406380-407453:+ | gene-YLR141W_EthanolRed | rna-NM_001182028.1_EthanolRed | cds-NP_013242.1_EthanolRed | 97.7 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:405891-406964:+ | gene-YLR141W_FaliES1 | rna-NM_001182028.1_FaliES1 | cds-NP_013242.1_FaliES1 | 97.8 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000061.1:12545-13627:+ | gene-YLR141W_JAY291 | rna-NM_001182028.1_JAY291 | cds-NP_013242.1_JAY291 | 98.8 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:418051-419151:+ | gene-YLR141W_MUCL30387 | rna-NM_001182028.1_MUCL30387 | cds-NP_013242.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:422852-423952:+ | gene-YLR141W_MUCL30388 | rna-NM_001182028.1_MUCL30388 | cds-NP_013242.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:413831-414904:+ | gene-YLR141W_MUCL39482 | rna-NM_001182028.1_MUCL39482 | cds-NP_013242.1_MUCL39482 | 97.6 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:413959-415059:+ | gene-YLR141W_MUCL42920 | rna-NM_001182028.1_MUCL42920 | cds-NP_013242.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:423657-424748:+ | gene-YLR141W_NCIM3186 | rna-NM_001182028.1_NCIM3186 | cds-NP_013242.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:406103-407176:+ | gene-YLR141W_NCYC1407 | rna-NM_001182028.1_NCYC1407 | cds-NP_013242.1_NCYC1407 | 97.6 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:411653-412735:+ | gene-YLR141W_PE2H3 | rna-NM_001182028.1_PE2H3 | cds-NP_013242.1_PE2H3 | 98.8 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:411394-412476:+ | gene-YLR141W_PE2H4 | rna-NM_001182028.1_PE2H4 | cds-NP_013242.1_PE2H4 | 98.8 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:423683-424774:+ | gene-YLR141W_S288C | rna-NM_001182028.1_S288C | cds-NP_013242.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:49589-50671:+ | gene-YLR141W_SA1 | rna-NM_001182028.1_SA1 | cds-NP_013242.1_SA1 | 98.6 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:407101-408174:+ | gene-YLR141W_ThermosaccDry | rna-NM_001182028.1_ThermosaccDry | cds-NP_013242.1_ThermosaccDry | 97.8 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:419794-420876:+ | gene-YLR141W_VR1 | rna-NM_001182028.1_VR1 | cds-NP_013242.1_VR1 | 98.9 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:404887-405960:+ | gene-YLR141W_ZTW1 | rna-NM_001182028.1_ZTW1 | cds-NP_013242.1_ZTW1 | 97.7 | 98.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:414877-415965:+ | gene-YLR141W_Sparadoxus | rna-NM_001182028.1_Sparadoxus | cds-NP_013242.1_Sparadoxus | 91.1 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |