Gene name: RRN11
Reference locus (S288C): YML043C
Gene biotype: protein_coding
Description: RNA polymerase I-specific transcription initiation factor RRN11; Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcription of 35S rRNA genes by RNA polymerase I and is composed of Rrn6p, Rrn7p, and Rrn11p
Top 10 interactors (score): RRN7 (0.999); RRN6 (0.999); RRN9 (0.989); RRN5 (0.988); RRN10 (0.988); RRN3 (0.979); UAF30 (0.976); RPA12 (0.956); SPT15 (0.941); RPC19 (0.937); RPA34 (0.929); RPA49 (0.928); RPB5 (0.918); RPC10 (0.911); BFR2 (0.909); UTP15 (0.898); RPA135 (0.894); RPB8 (0.893); RPB10 (0.885); RPA43 (0.878)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:177749-179272:- | gene-YML043C_AKU4011 | rna-NM_001182401.1_AKU4011 | cds-NP_013669.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:296227-297750:+ | gene-YML043C_BG1 | rna-NM_001182401.1_BG1 | cds-NP_013669.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:185522-187045:- | gene-YML043C_Bruggeman | rna-NM_001182401.1_Bruggeman | cds-NP_013669.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:188073-189596:- | gene-YML043C_CAT1 | rna-NM_001182401.1_CAT1 | cds-NP_013669.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:178510-180033:- | gene-YML043C_CBS1585 | rna-NM_001182401.1_CBS1585 | cds-NP_013669.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:184091-185614:- | gene-YML043C_CBS436 | rna-NM_001182401.1_CBS436 | cds-NP_013669.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:292309-293832:- | gene-YML043C_CBS6412 | rna-NM_001182401.1_CBS6412 | cds-NP_013669.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:177822-179345:- | gene-YML043C_CBS6413 | rna-NM_001182401.1_CBS6413 | cds-NP_013669.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:190527-192050:- | gene-YML043C_CENPK1137D | rna-NM_001182401.1_CENPK1137D | cds-NP_013669.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:178572-180095:- | gene-YML043C_EthanolRed | rna-NM_001182401.1_EthanolRed | cds-NP_013669.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:179103-180626:- | gene-YML043C_FaliES1 | rna-NM_001182401.1_FaliES1 | cds-NP_013669.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:29073-30596:+ | gene-YML043C_JAY291 | rna-NM_001182401.1_JAY291 | cds-NP_013669.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:183260-184783:- | gene-YML043C_MUCL30387 | rna-NM_001182401.1_MUCL30387 | cds-NP_013669.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:187283-188806:- | gene-YML043C_MUCL30388 | rna-NM_001182401.1_MUCL30388 | cds-NP_013669.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:178856-180379:- | gene-YML043C_MUCL39482 | rna-NM_001182401.1_MUCL39482 | cds-NP_013669.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:184363-185886:- | gene-YML043C_MUCL42920 | rna-NM_001182401.1_MUCL42920 | cds-NP_013669.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:190198-191721:- | gene-YML043C_NCIM3186 | rna-NM_001182401.1_NCIM3186 | cds-NP_013669.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:178818-180341:- | gene-YML043C_NCYC1407 | rna-NM_001182401.1_NCYC1407 | cds-NP_013669.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:184679-186202:- | gene-YML043C_PE2H3 | rna-NM_001182401.1_PE2H3 | cds-NP_013669.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:190775-192298:- | gene-YML043C_PE2H4 | rna-NM_001182401.1_PE2H4 | cds-NP_013669.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:190244-191767:- | gene-YML043C_S288C | rna-NM_001182401.1_S288C | cds-NP_013669.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:41322-42845:+ | gene-YML043C_SA1 | rna-NM_001182401.1_SA1 | cds-NP_013669.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:178619-180142:- | gene-YML043C_ThermosaccDry | rna-NM_001182401.1_ThermosaccDry | cds-NP_013669.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:182620-184143:- | gene-YML043C_VR1 | rna-NM_001182401.1_VR1 | cds-NP_013669.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:157691-159214:- | gene-YML043C_ZTW1 | rna-NM_001182401.1_ZTW1 | cds-NP_013669.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:189185-190726:- | gene-YML043C_Sparadoxus | rna-NM_001182401.1_Sparadoxus | cds-NP_013669.1_Sparadoxus | 87.1 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |