Gene name: RRN10
Reference locus (S288C): YBL025W
Gene biotype: protein_coding
Description: Rna polymerase i-specific transcription initiation factor rrn10; Protein involved in promoting high level transcription of rDNA; subunit of UAF (upstream activation factor) for RNA polymerase I
Top 10 interactors (score): RRN9 (0.999); RRN5 (0.999); UAF30 (0.998); RRN7 (0.991); RRN6 (0.988); RRN11 (0.988); SPT15 (0.786); RRN3 (0.78); HHT1 (0.685); RRG9 (0.618); CDC14 (0.589); HHT2 (0.576); YER039C-A (0.572); RPA190 (0.571); FOB1 (0.571); HMO1 (0.555); RPL40B (0.539); HHF1 (0.533); ASF2 (0.522); PAU11 (0.489)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:165094-165531:+ | gene-YBL025W_AKU4011 | rna-NM_001178265.1_AKU4011 | cds-NP_009528.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:155920-156357:+ | gene-YBL025W_BG1 | rna-NM_001178265.1_BG1 | cds-NP_009528.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:165678-166115:+ | gene-YBL025W_Bruggeman | rna-NM_001178265.1_Bruggeman | cds-NP_009528.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:168290-168727:+ | gene-YBL025W_CAT1 | rna-NM_001178265.1_CAT1 | cds-NP_009528.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:157649-158086:+ | gene-YBL025W_CBS1585 | rna-NM_001178265.1_CBS1585 | cds-NP_009528.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:166098-166535:+ | gene-YBL025W_CBS436 | rna-NM_001178265.1_CBS436 | cds-NP_009528.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:256428-256865:+ | gene-YBL025W_CBS6412 | rna-NM_001178265.1_CBS6412 | cds-NP_009528.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:163219-163656:+ | gene-YBL025W_CBS6413 | rna-NM_001178265.1_CBS6413 | cds-NP_009528.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:165247-165684:+ | gene-YBL025W_CENPK1137D | rna-NM_001178265.1_CENPK1137D | cds-NP_009528.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:292635-293072:+ | gene-YBL025W_EthanolRed | rna-NM_001178265.1_EthanolRed | cds-NP_009528.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:179901-180338:+ | gene-YBL025W_FaliES1 | rna-NM_001178265.1_FaliES1 | cds-NP_009528.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000421.1:5572-6009:+ | gene-YBL025W_JAY291 | rna-NM_001178265.1_JAY291 | cds-NP_009528.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:165286-165723:+ | gene-YBL025W_MUCL30387 | rna-NM_001178265.1_MUCL30387 | cds-NP_009528.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:166578-167015:+ | gene-YBL025W_MUCL30388 | rna-NM_001178265.1_MUCL30388 | cds-NP_009528.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:157834-158271:+ | gene-YBL025W_MUCL39482 | rna-NM_001178265.1_MUCL39482 | cds-NP_009528.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:164858-165295:+ | gene-YBL025W_MUCL42920 | rna-NM_001178265.1_MUCL42920 | cds-NP_009528.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:171278-171715:+ | gene-YBL025W_NCIM3186 | rna-NM_001178265.1_NCIM3186 | cds-NP_009528.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:158983-159420:+ | gene-YBL025W_NCYC1407 | rna-NM_001178265.1_NCYC1407 | cds-NP_009528.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:165208-165645:+ | gene-YBL025W_PE2H3 | rna-NM_001178265.1_PE2H3 | cds-NP_009528.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:162852-163289:+ | gene-YBL025W_PE2H4 | rna-NM_001178265.1_PE2H4 | cds-NP_009528.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:171481-171918:+ | gene-YBL025W_S288C | rna-NM_001178265.1_S288C | cds-NP_009528.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:56145-56582:+ | gene-YBL025W_SA1 | rna-NM_001178265.1_SA1 | cds-NP_009528.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:179856-180293:+ | gene-YBL025W_ThermosaccDry | rna-NM_001178265.1_ThermosaccDry | cds-NP_009528.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:162022-162459:+ | gene-YBL025W_VR1 | rna-NM_001178265.1_VR1 | cds-NP_009528.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:156571-157008:+ | gene-YBL025W_ZTW1 | rna-NM_001178265.1_ZTW1 | cds-NP_009528.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:191546-191983:+ | gene-YBL025W_Sparadoxus | rna-NM_001178265.1_Sparadoxus | cds-NP_009528.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |