Gene name: RRI2
Reference locus (S288C): YOL117W
Gene biotype: protein_coding
Description: Subunit of the COP9 signalosome (CSN) complex; this complex cleaves the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; plays a role in the mating pheromone response
Top 10 interactors (score): CSN9 (0.998); PCI8 (0.997); RRI1 (0.997); CSI1 (0.997); RPN5 (0.983); YJR084W (0.836); THP1 (0.715); CLU1 (0.695); DSE3 (0.695); YIR016W (0.695); PTH4 (0.693); SKP1 (0.664); BRE5 (0.66); YLR363W-A (0.574); THP3 (0.558); APE2 (0.532); MNT2 (0.525); ALT1 (0.499); KIN82 (0.495); MSB4 (0.487)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:86196-88133:+ | gene-YOL117W_AKU4011 | rna-NM_001183371.1_AKU4011 | cds-NP_014524.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:51825-53762:+ | gene-YOL117W_BG1 | rna-NM_001183371.1_BG1 | cds-NP_014524.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:87470-89407:+ | gene-YOL117W_Bruggeman | rna-NM_001183371.1_Bruggeman | cds-NP_014524.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:86660-88597:+ | gene-YOL117W_CAT1 | rna-NM_001183371.1_CAT1 | cds-NP_014524.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:80672-82609:+ | gene-YOL117W_CBS1585 | rna-NM_001183371.1_CBS1585 | cds-NP_014524.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:86507-88444:+ | gene-YOL117W_CBS436 | rna-NM_001183371.1_CBS436 | cds-NP_014524.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:80535-82472:+ | gene-YOL117W_CBS6412 | rna-NM_001183371.1_CBS6412 | cds-NP_014524.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:87003-88940:+ | gene-YOL117W_CBS6413 | rna-NM_001183371.1_CBS6413 | cds-NP_014524.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:97446-99383:+ | gene-YOL117W_CENPK1137D | rna-NM_001183371.1_CENPK1137D | cds-NP_014524.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:84469-86406:+ | gene-YOL117W_EthanolRed | rna-NM_001183371.1_EthanolRed | cds-NP_014524.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:86498-88435:+ | gene-YOL117W_FaliES1 | rna-NM_001183371.1_FaliES1 | cds-NP_014524.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000203.1:3706-5643:+ | gene-YOL117W_JAY291 | rna-NM_001183371.1_JAY291 | cds-NP_014524.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:92112-94049:+ | gene-YOL117W_MUCL30387 | rna-NM_001183371.1_MUCL30387 | cds-NP_014524.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:95111-97048:+ | gene-YOL117W_MUCL30388 | rna-NM_001183371.1_MUCL30388 | cds-NP_014524.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:88610-90547:+ | gene-YOL117W_MUCL39482 | rna-NM_001183371.1_MUCL39482 | cds-NP_014524.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:104741-106678:+ | gene-YOL117W_MUCL42920 | rna-NM_001183371.1_MUCL42920 | cds-NP_014524.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:97440-99377:+ | gene-YOL117W_NCIM3186 | rna-NM_001183371.1_NCIM3186 | cds-NP_014524.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:94644-96581:+ | gene-YOL117W_NCYC1407 | rna-NM_001183371.1_NCYC1407 | cds-NP_014524.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:73106-75043:+ | gene-YOL117W_PE2H3 | rna-NM_001183371.1_PE2H3 | cds-NP_014524.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:90034-91971:+ | gene-YOL117W_PE2H4 | rna-NM_001183371.1_PE2H4 | cds-NP_014524.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:97551-99488:+ | gene-YOL117W_S288C | rna-NM_001183371.1_S288C | cds-NP_014524.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:70978-72915:+ | gene-YOL117W_SA1 | rna-NM_001183371.1_SA1 | cds-NP_014524.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:85636-87573:+ | gene-YOL117W_ThermosaccDry | rna-NM_001183371.1_ThermosaccDry | cds-NP_014524.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:86283-88220:+ | gene-YOL117W_VR1 | rna-NM_001183371.1_VR1 | cds-NP_014524.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:85361-87298:+ | gene-YOL117W_ZTW1 | rna-NM_001183371.1_ZTW1 | cds-NP_014524.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:88137-90074:+ | gene-YOL117W_Sparadoxus | rna-NM_001183371.1_Sparadoxus | cds-NP_014524.1_Sparadoxus | 88.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |