Gene name: RRF1
Reference locus (S288C): YHR038W
Gene biotype: protein_coding
Description: Ribosome-recycling factor, mitochondrial; Mitochondrial ribosome recycling factor; essential for mitochondrial protein synthesis and for the maintenance of the respiratory function of mitochondria
Top 10 interactors (score): PTH4 (0.993); MRPS9 (0.992); MRPS16 (0.986); IMG1 (0.986); MRP7 (0.984); YNL122C (0.979); RTC6 (0.978); MRPL39 (0.976); MRP17 (0.974); MRPL8 (0.973); MRPL32 (0.97); MRPL51 (0.965); MRPL3 (0.94); MRPL24 (0.926); MRP20 (0.923); MRP4 (0.922); RPS3 (0.918); MEF1 (0.913); RSM10 (0.906); RPL25 (0.903)
Homologues (species, bitscore): RRF (Arabidopsis thaliana, 60.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:172327-173019:+ | gene-YHR038W_AKU4011 | rna-NM_001179168.1_AKU4011 | cds-NP_011903.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:92542-93234:+ | gene-YHR038W_BG1 | rna-NM_001179168.1_BG1 | cds-NP_011903.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:179776-180468:+ | gene-YHR038W_Bruggeman | rna-NM_001179168.1_Bruggeman | cds-NP_011903.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:174161-174853:+ | gene-YHR038W_CAT1 | rna-NM_001179168.1_CAT1 | cds-NP_011903.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:172699-173391:+ | gene-YHR038W_CBS1585 | rna-NM_001179168.1_CBS1585 | cds-NP_011903.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:166944-167636:+ | gene-YHR038W_CBS436 | rna-NM_001179168.1_CBS436 | cds-NP_011903.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:171671-172363:+ | gene-YHR038W_CBS6412 | rna-NM_001179168.1_CBS6412 | cds-NP_011903.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:172506-173198:+ | gene-YHR038W_CBS6413 | rna-NM_001179168.1_CBS6413 | cds-NP_011903.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:177327-178019:+ | gene-YHR038W_CENPK1137D | rna-NM_001179168.1_CENPK1137D | cds-NP_011903.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:171831-172523:+ | gene-YHR038W_EthanolRed | rna-NM_001179168.1_EthanolRed | cds-NP_011903.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:172810-173502:+ | gene-YHR038W_FaliES1 | rna-NM_001179168.1_FaliES1 | cds-NP_011903.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000273.1:8136-8828:- | gene-YHR038W_JAY291 | rna-NM_001179168.1_JAY291 | cds-NP_011903.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:178845-179537:+ | gene-YHR038W_MUCL30387 | rna-NM_001179168.1_MUCL30387 | cds-NP_011903.1_MUCL30387 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:179315-180007:+ | gene-YHR038W_MUCL30388 | rna-NM_001179168.1_MUCL30388 | cds-NP_011903.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:171736-172428:+ | gene-YHR038W_MUCL39482 | rna-NM_001179168.1_MUCL39482 | cds-NP_011903.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:178405-179097:+ | gene-YHR038W_MUCL42920 | rna-NM_001179168.1_MUCL42920 | cds-NP_011903.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:183948-184640:+ | gene-YHR038W_NCIM3186 | rna-NM_001179168.1_NCIM3186 | cds-NP_011903.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:171599-172291:+ | gene-YHR038W_NCYC1407 | rna-NM_001179168.1_NCYC1407 | cds-NP_011903.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:173939-174631:+ | gene-YHR038W_PE2H3 | rna-NM_001179168.1_PE2H3 | cds-NP_011903.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:181380-182072:+ | gene-YHR038W_PE2H4 | rna-NM_001179168.1_PE2H4 | cds-NP_011903.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:184066-184758:+ | gene-YHR038W_S288C | rna-NM_001179168.1_S288C | cds-NP_011903.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:173811-174503:- | gene-YHR038W_SA1 | rna-NM_001179168.1_SA1 | cds-NP_011903.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:173899-174591:+ | gene-YHR038W_ThermosaccDry | rna-NM_001179168.1_ThermosaccDry | cds-NP_011903.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:180430-181122:+ | gene-YHR038W_VR1 | rna-NM_001179168.1_VR1 | cds-NP_011903.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:165450-166142:+ | gene-YHR038W_ZTW1 | rna-NM_001179168.1_ZTW1 | cds-NP_011903.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:171531-172223:+ | gene-YHR038W_Sparadoxus | rna-NM_001179168.1_Sparadoxus | cds-NP_011903.1_Sparadoxus | 90.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |