Gene name: RRB1
Reference locus (S288C): YMR131C
Gene biotype: protein_coding
Description: Ribosome assembly protein RRB1; Specific chaperone for ribosomal protein Rpl3p; binds to nascent Rpl3p during translation; essential gene
Top 10 interactors (score): PWP1 (0.999); NUG1 (0.999); ERB1 (0.999); UTP21 (0.999); NOC2 (0.999); RPA43 (0.998); BRX1 (0.998); YTM1 (0.998); DIP2 (0.997); HAS1 (0.997); NOP15 (0.997); RPF2 (0.997); PWP2 (0.996); DBP9 (0.996); RPL3 (0.996); IMP4 (0.996); NOP58 (0.996); NOG1 (0.996); EBP2 (0.995); UTP13 (0.995)
Homologues (species, bitscore): GRWD1 (Homo sapiens, 261.9); Grwd1 (Mus musculus, 261.9); grwd1 (Danio rerio, 283.9); grwd1 (Xenopus tropicalis, 275.0); l(2)09851 (Drosophila melanogaster, 271.6); Y54H5A.1 (Caenorhabditis elegans, 266.5); AT2G19540 (Arabidopsis thaliana, 273.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:572663-574198:- | gene-YMR131C_AKU4011 | rna-NM_001182632.1_AKU4011 | cds-NP_013850.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:98336-99871:+ | gene-YMR131C_BG1 | rna-NM_001182632.1_BG1 | cds-NP_013850.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:515843-517378:- | gene-YMR131C_Bruggeman | rna-NM_001182632.1_Bruggeman | cds-NP_013850.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:518057-519592:- | gene-YMR131C_CAT1 | rna-NM_001182632.1_CAT1 | cds-NP_013850.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:505586-507121:- | gene-YMR131C_CBS1585 | rna-NM_001182632.1_CBS1585 | cds-NP_013850.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:509458-510993:- | gene-YMR131C_CBS436 | rna-NM_001182632.1_CBS436 | cds-NP_013850.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:618579-620114:- | gene-YMR131C_CBS6412 | rna-NM_001182632.1_CBS6412 | cds-NP_013850.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:504146-505681:- | gene-YMR131C_CBS6413 | rna-NM_001182632.1_CBS6413 | cds-NP_013850.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:527677-529212:- | gene-YMR131C_CENPK1137D | rna-NM_001182632.1_CENPK1137D | cds-NP_013850.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:503775-505310:- | gene-YMR131C_EthanolRed | rna-NM_001182632.1_EthanolRed | cds-NP_013850.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:509716-511251:- | gene-YMR131C_FaliES1 | rna-NM_001182632.1_FaliES1 | cds-NP_013850.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000294.1:15739-17274:+ | gene-YMR131C_JAY291 | rna-NM_001182632.1_JAY291 | cds-NP_013850.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:510568-512103:- | gene-YMR131C_MUCL30387 | rna-NM_001182632.1_MUCL30387 | cds-NP_013850.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:516095-517630:- | gene-YMR131C_MUCL30388 | rna-NM_001182632.1_MUCL30388 | cds-NP_013850.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:506287-507822:- | gene-YMR131C_MUCL39482 | rna-NM_001182632.1_MUCL39482 | cds-NP_013850.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:512581-514116:- | gene-YMR131C_MUCL42920 | rna-NM_001182632.1_MUCL42920 | cds-NP_013850.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:533117-534652:- | gene-YMR131C_NCIM3186 | rna-NM_001182632.1_NCIM3186 | cds-NP_013850.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:505925-507460:- | gene-YMR131C_NCYC1407 | rna-NM_001182632.1_NCYC1407 | cds-NP_013850.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:516360-517895:- | gene-YMR131C_PE2H3 | rna-NM_001182632.1_PE2H3 | cds-NP_013850.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:516814-518349:- | gene-YMR131C_PE2H4 | rna-NM_001182632.1_PE2H4 | cds-NP_013850.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:533163-534698:- | gene-YMR131C_S288C | rna-NM_001182632.1_S288C | cds-NP_013850.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:36577-38112:+ | gene-YMR131C_SA1 | rna-NM_001182632.1_SA1 | cds-NP_013850.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:506173-507708:- | gene-YMR131C_ThermosaccDry | rna-NM_001182632.1_ThermosaccDry | cds-NP_013850.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:518862-520397:- | gene-YMR131C_VR1 | rna-NM_001182632.1_VR1 | cds-NP_013850.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:481318-482853:- | gene-YMR131C_ZTW1 | rna-NM_001182632.1_ZTW1 | cds-NP_013850.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:517665-519203:- | gene-YMR131C_Sparadoxus | rna-NM_001182632.1_Sparadoxus | cds-NP_013850.1_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |