Gene name: RPT5
Reference locus (S288C): YOR117W
Gene biotype: protein_coding
Description: ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription; similar to human TBP1
Top 10 interactors (score): SCL1 (0.999); RPN1 (0.999); PUP1 (0.999); PRE5 (0.999); NAS6 (0.999); RPT2 (0.999); RPN10 (0.999); RPN11 (0.999); PRE9 (0.999); PUP2 (0.999); PRE6 (0.999); UBP6 (0.999); RPN9 (0.999); RPN8 (0.999); RPN7 (0.999); PRE3 (0.999); RPN12 (0.999); PRE2 (0.999); RPN5 (0.999); NAS2 (0.999)
Homologues (species, bitscore): PSMC3 (Homo sapiens, 617.1); Psmc3 (Mus musculus, 617.8); psmc3 (Danio rerio, 609.4); psmc3 (Xenopus tropicalis, 613.2); Rpt5 (Drosophila melanogaster, 610.5); rpt-5 (Caenorhabditis elegans, 604.0); RPT5A (Arabidopsis thaliana, 612.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:529095-530399:+ | gene-YOR117W_AKU4011 | rna-NM_001183536.3_AKU4011 | cds-NP_014760.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:48870-50174:- | gene-YOR117W_BG1 | rna-NM_001183536.3_BG1 | cds-NP_014760.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:532642-533946:+ | gene-YOR117W_Bruggeman | rna-NM_001183536.3_Bruggeman | cds-NP_014760.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:532646-533950:+ | gene-YOR117W_CAT1 | rna-NM_001183536.3_CAT1 | cds-NP_014760.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:524658-525962:+ | gene-YOR117W_CBS1585 | rna-NM_001183536.3_CBS1585 | cds-NP_014760.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:529366-530670:+ | gene-YOR117W_CBS436 | rna-NM_001183536.3_CBS436 | cds-NP_014760.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:523143-524447:+ | gene-YOR117W_CBS6412 | rna-NM_001183536.3_CBS6412 | cds-NP_014760.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:530440-531744:+ | gene-YOR117W_CBS6413 | rna-NM_001183536.3_CBS6413 | cds-NP_014760.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:545109-546413:+ | gene-YOR117W_CENPK1137D | rna-NM_001183536.3_CENPK1137D | cds-NP_014760.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:525462-526766:+ | gene-YOR117W_EthanolRed | rna-NM_001183536.3_EthanolRed | cds-NP_014760.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:529157-530461:+ | gene-YOR117W_FaliES1 | rna-NM_001183536.3_FaliES1 | cds-NP_014760.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:28803-30107:- | gene-YOR117W_JAY291 | rna-NM_001183536.3_JAY291 | cds-NP_014760.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:537199-538503:+ | gene-YOR117W_MUCL30387 | rna-NM_001183536.3_MUCL30387 | cds-NP_014760.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:542407-543711:+ | gene-YOR117W_MUCL30388 | rna-NM_001183536.3_MUCL30388 | cds-NP_014760.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:532052-533356:+ | gene-YOR117W_MUCL39482 | rna-NM_001183536.3_MUCL39482 | cds-NP_014760.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:548097-549401:+ | gene-YOR117W_MUCL42920 | rna-NM_001183536.3_MUCL42920 | cds-NP_014760.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:544918-546222:+ | gene-YOR117W_NCIM3186 | rna-NM_001183536.3_NCIM3186 | cds-NP_014760.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:538500-539804:+ | gene-YOR117W_NCYC1407 | rna-NM_001183536.3_NCYC1407 | cds-NP_014760.3_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:537503-538807:+ | gene-YOR117W_PE2H3 | rna-NM_001183536.3_PE2H3 | cds-NP_014760.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:547880-549184:+ | gene-YOR117W_PE2H4 | rna-NM_001183536.3_PE2H4 | cds-NP_014760.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:545029-546333:+ | gene-YOR117W_S288C | rna-NM_001183536.3_S288C | cds-NP_014760.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:74571-75875:+ | gene-YOR117W_SA1 | rna-NM_001183536.3_SA1 | cds-NP_014760.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:528341-529645:+ | gene-YOR117W_ThermosaccDry | rna-NM_001183536.3_ThermosaccDry | cds-NP_014760.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:530448-531752:+ | gene-YOR117W_VR1 | rna-NM_001183536.3_VR1 | cds-NP_014760.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:262280-263584:+ | gene-YOR117W_ZTW1 | rna-NM_001183536.3_ZTW1 | cds-NP_014760.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:534303-535607:+ | gene-YOR117W_Sparadoxus | rna-NM_001183536.3_Sparadoxus | cds-NP_014760.3_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |