Gene name: RPT4
Reference locus (S288C): YOR259C
Gene biotype: protein_coding
Description: 26S proteasome subunit RPT4; ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in degradation of ubiquitinated substrates; contributes preferentially to ERAD; required for spindle pole body duplication; mainly nuclear localization
Top 10 interactors (score): PRE3 (0.999); RPT3 (0.999); PRE4 (0.999); PRE1 (0.999); PUP3 (0.999); PRE7 (0.999); PRE8 (0.999); RPN13 (0.999); RPN3 (0.999); RPT6 (0.999); PRE10 (0.999); RPT1 (0.999); RPN2 (0.999); SEM1 (0.999); RPN6 (0.999); RPN1 (0.999); NAS6 (0.999); PRE5 (0.999); RPT2 (0.999); SCL1 (0.999)
Homologues (species, bitscore): PSMC6 (Homo sapiens, 557.4); Psmc6 (Mus musculus, 558.1); psmc6 (Danio rerio, 557.8); psmc6 (Xenopus tropicalis, 553.9); Rpt4 (Drosophila melanogaster, 576.2); rpt-4 (Caenorhabditis elegans, 545.0); RPT4A (Arabidopsis thaliana, 546.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:803170-804483:- | gene-YOR259C_AKU4011 | rna-NM_001183678.3_AKU4011 | cds-NP_014902.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:205203-206516:- | gene-YOR259C_BG1 | rna-NM_001183678.3_BG1 | cds-NP_014902.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:788629-789942:- | gene-YOR259C_Bruggeman | rna-NM_001183678.3_Bruggeman | cds-NP_014902.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:789281-790594:- | gene-YOR259C_CAT1 | rna-NM_001183678.3_CAT1 | cds-NP_014902.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:786159-787472:- | gene-YOR259C_CBS1585 | rna-NM_001183678.3_CBS1585 | cds-NP_014902.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:784847-786160:- | gene-YOR259C_CBS436 | rna-NM_001183678.3_CBS436 | cds-NP_014902.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:783278-784591:- | gene-YOR259C_CBS6412 | rna-NM_001183678.3_CBS6412 | cds-NP_014902.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:791919-793232:- | gene-YOR259C_CBS6413 | rna-NM_001183678.3_CBS6413 | cds-NP_014902.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:812156-813469:- | gene-YOR259C_CENPK1137D | rna-NM_001183678.3_CENPK1137D | cds-NP_014902.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:779286-780599:- | gene-YOR259C_EthanolRed | rna-NM_001183678.3_EthanolRed | cds-NP_014902.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:784685-785998:- | gene-YOR259C_FaliES1 | rna-NM_001183678.3_FaliES1 | cds-NP_014902.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:40836-42149:+ | gene-YOR259C_JAY291 | rna-NM_001183678.3_JAY291 | cds-NP_014902.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:792911-794224:- | gene-YOR259C_MUCL30387 | rna-NM_001183678.3_MUCL30387 | cds-NP_014902.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:800027-801340:- | gene-YOR259C_MUCL30388 | rna-NM_001183678.3_MUCL30388 | cds-NP_014902.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:793490-794803:- | gene-YOR259C_MUCL39482 | rna-NM_001183678.3_MUCL39482 | cds-NP_014902.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:803074-804387:- | gene-YOR259C_MUCL42920 | rna-NM_001183678.3_MUCL42920 | cds-NP_014902.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:812284-813597:- | gene-YOR259C_NCIM3186 | rna-NM_001183678.3_NCIM3186 | cds-NP_014902.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:793588-794901:- | gene-YOR259C_NCYC1407 | rna-NM_001183678.3_NCYC1407 | cds-NP_014902.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:792885-794198:- | gene-YOR259C_PE2H3 | rna-NM_001183678.3_PE2H3 | cds-NP_014902.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:803262-804575:- | gene-YOR259C_PE2H4 | rna-NM_001183678.3_PE2H4 | cds-NP_014902.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:812395-813708:- | gene-YOR259C_S288C | rna-NM_001183678.3_S288C | cds-NP_014902.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:222385-223698:- | gene-YOR259C_SA1 | rna-NM_001183678.3_SA1 | cds-NP_014902.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:783868-785181:- | gene-YOR259C_ThermosaccDry | rna-NM_001183678.3_ThermosaccDry | cds-NP_014902.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:847325-848638:- | gene-YOR259C_VR1 | rna-NM_001183678.3_VR1 | cds-NP_014902.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:516787-518100:- | gene-YOR259C_ZTW1 | rna-NM_001183678.3_ZTW1 | cds-NP_014902.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:789653-790966:- | gene-YOR259C_Sparadoxus | rna-NM_001183678.3_Sparadoxus | cds-NP_014902.3_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |