Gene name: RPT3
Reference locus (S288C): YDR394W
Gene biotype: protein_coding
Description: ATPase of the 19S regulatory particle of the 26S proteasome; one of ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; substrate of N-acetyltransferase B
Top 10 interactors (score): PRE8 (0.999); RPN13 (0.999); RPN3 (0.999); RPT6 (0.999); PRE10 (0.999); UBP6 (0.999); RPN9 (0.999); RPN8 (0.999); PUP1 (0.999); RPT5 (0.999); RPN7 (0.999); PRE3 (0.999); RPN12 (0.999); PRE2 (0.999); RPN5 (0.999); RPN10 (0.999); RPN11 (0.999); PRE9 (0.999); PUP2 (0.999); PRE6 (0.999)
Homologues (species, bitscore): PSMC4 (Homo sapiens, 577.4); Psmc4 (Mus musculus, 575.1); psmc4 (Danio rerio, 570.1); psmc4 (Xenopus tropicalis, 576.2); Rpt3 (Drosophila melanogaster, 583.2); rpt-3 (Caenorhabditis elegans, 563.9); RPT3 (Arabidopsis thaliana, 582.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1201821-1203107:+ | gene-YDR394W_AKU4011 | rna-NM_001180702.3_AKU4011 | cds-NP_010682.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:80307-81593:+ | gene-YDR394W_BG1 | rna-NM_001180702.3_BG1 | cds-NP_010682.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1232707-1233993:+ | gene-YDR394W_Bruggeman | rna-NM_001180702.3_Bruggeman | cds-NP_010682.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1211263-1212549:+ | gene-YDR394W_CAT1 | rna-NM_001180702.3_CAT1 | cds-NP_010682.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1196742-1198028:+ | gene-YDR394W_CBS1585 | rna-NM_001180702.3_CBS1585 | cds-NP_010682.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1215610-1216896:+ | gene-YDR394W_CBS436 | rna-NM_001180702.3_CBS436 | cds-NP_010682.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1192795-1194081:+ | gene-YDR394W_CBS6412 | rna-NM_001180702.3_CBS6412 | cds-NP_010682.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1214650-1215936:+ | gene-YDR394W_CBS6413 | rna-NM_001180702.3_CBS6413 | cds-NP_010682.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1260345-1261631:+ | gene-YDR394W_CENPK1137D | rna-NM_001180702.3_CENPK1137D | cds-NP_010682.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1206227-1207513:+ | gene-YDR394W_EthanolRed | rna-NM_001180702.3_EthanolRed | cds-NP_010682.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1209537-1210823:+ | gene-YDR394W_FaliES1 | rna-NM_001180702.3_FaliES1 | cds-NP_010682.3_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:44713-45999:- | gene-YDR394W_JAY291 | rna-NM_001180702.3_JAY291 | cds-NP_010682.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1216269-1217555:+ | gene-YDR394W_MUCL30387 | rna-NM_001180702.3_MUCL30387 | cds-NP_010682.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1198380-1199666:+ | gene-YDR394W_MUCL30388 | rna-NM_001180702.3_MUCL30388 | cds-NP_010682.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1188070-1189356:+ | gene-YDR394W_MUCL39482 | rna-NM_001180702.3_MUCL39482 | cds-NP_010682.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1130509-1131795:+ | gene-YDR394W_MUCL42920 | rna-NM_001180702.3_MUCL42920 | cds-NP_010682.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1261604-1262890:+ | gene-YDR394W_NCIM3186 | rna-NM_001180702.3_NCIM3186 | cds-NP_010682.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1202042-1203328:+ | gene-YDR394W_NCYC1407 | rna-NM_001180702.3_NCYC1407 | cds-NP_010682.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1212170-1213456:+ | gene-YDR394W_PE2H3 | rna-NM_001180702.3_PE2H3 | cds-NP_010682.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1217743-1219029:+ | gene-YDR394W_PE2H4 | rna-NM_001180702.3_PE2H4 | cds-NP_010682.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1261681-1262967:+ | gene-YDR394W_S288C | rna-NM_001180702.3_S288C | cds-NP_010682.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:44825-46111:- | gene-YDR394W_SA1 | rna-NM_001180702.3_SA1 | cds-NP_010682.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1213799-1215085:+ | gene-YDR394W_ThermosaccDry | rna-NM_001180702.3_ThermosaccDry | cds-NP_010682.3_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1228982-1230268:+ | gene-YDR394W_VR1 | rna-NM_001180702.3_VR1 | cds-NP_010682.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:256611-257897:+ | gene-YDR394W_ZTW1 | rna-NM_001180702.3_ZTW1 | cds-NP_010682.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1208914-1210200:+ | gene-YDR394W_Sparadoxus | rna-NM_001180702.3_Sparadoxus | cds-NP_010682.3_Sparadoxus | 94.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |