Gene name: RPT2
Reference locus (S288C): YDL007W
Gene biotype: protein_coding
Description: ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; required for normal peptide hydrolysis by the core 20S particle; N-myristoylation of Rpt2p at Gly2 is involved in regulating the proper intracellular distribution of proteasome activity by controlling the nuclear localization of the 26S proteasome
Top 10 interactors (score): PUP2 (0.999); SCL1 (0.999); RPN1 (0.999); NAS6 (0.999); PRE5 (0.999); RPN2 (0.999); SEM1 (0.999); RPN6 (0.999); RPT1 (0.999); PRE8 (0.999); RPN13 (0.999); RPN3 (0.999); RPT6 (0.999); PRE10 (0.999); PRE4 (0.999); RPT3 (0.999); RPT4 (0.999); PRE1 (0.999); PUP3 (0.999); PRE7 (0.999)
Homologues (species, bitscore): PSMC1 (Homo sapiens, 643.7); Psmc1 (Mus musculus, 643.7); psmc1a (Danio rerio, 646.0); psmc1 (Xenopus tropicalis, 641.3); Rpt2 (Drosophila melanogaster, 642.1); rpt-2 (Caenorhabditis elegans, 624.4); RPT2b (Arabidopsis thaliana, 631.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:423303-424616:+ | gene-YDL007W_AKU4011 | rna-NM_001180066.1_AKU4011 | cds-NP_010277.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:124794-126107:- | gene-YDL007W_BG1 | rna-NM_001180066.1_BG1 | cds-NP_010277.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:443902-445215:+ | gene-YDL007W_Bruggeman | rna-NM_001180066.1_Bruggeman | cds-NP_010277.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:436749-438062:+ | gene-YDL007W_CAT1 | rna-NM_001180066.1_CAT1 | cds-NP_010277.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:420514-421827:+ | gene-YDL007W_CBS1585 | rna-NM_001180066.1_CBS1585 | cds-NP_010277.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:437277-438590:+ | gene-YDL007W_CBS436 | rna-NM_001180066.1_CBS436 | cds-NP_010277.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:417762-419075:+ | gene-YDL007W_CBS6412 | rna-NM_001180066.1_CBS6412 | cds-NP_010277.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:439452-440765:+ | gene-YDL007W_CBS6413 | rna-NM_001180066.1_CBS6413 | cds-NP_010277.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:436910-438223:+ | gene-YDL007W_CENPK1137D | rna-NM_001180066.1_CENPK1137D | cds-NP_010277.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:432136-433449:+ | gene-YDL007W_EthanolRed | rna-NM_001180066.1_EthanolRed | cds-NP_010277.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:438304-439617:+ | gene-YDL007W_FaliES1 | rna-NM_001180066.1_FaliES1 | cds-NP_010277.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000442.1:32423-33736:- | gene-YDL007W_JAY291 | rna-NM_001180066.1_JAY291 | cds-NP_010277.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:437773-439086:+ | gene-YDL007W_MUCL30387 | rna-NM_001180066.1_MUCL30387 | cds-NP_010277.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:428235-429548:+ | gene-YDL007W_MUCL30388 | rna-NM_001180066.1_MUCL30388 | cds-NP_010277.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:421883-423196:+ | gene-YDL007W_MUCL39482 | rna-NM_001180066.1_MUCL39482 | cds-NP_010277.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:343308-344621:+ | gene-YDL007W_MUCL42920 | rna-NM_001180066.1_MUCL42920 | cds-NP_010277.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:437970-439283:+ | gene-YDL007W_NCIM3186 | rna-NM_001180066.1_NCIM3186 | cds-NP_010277.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:420805-422118:+ | gene-YDL007W_NCYC1407 | rna-NM_001180066.1_NCYC1407 | cds-NP_010277.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:436381-437694:+ | gene-YDL007W_PE2H3 | rna-NM_001180066.1_PE2H3 | cds-NP_010277.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:435740-437053:+ | gene-YDL007W_PE2H4 | rna-NM_001180066.1_PE2H4 | cds-NP_010277.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:438047-439360:+ | gene-YDL007W_S288C | rna-NM_001180066.1_S288C | cds-NP_010277.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000099.1:32612-33925:- | gene-YDL007W_SA1 | rna-NM_001180066.1_SA1 | cds-NP_010277.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:437784-439097:+ | gene-YDL007W_ThermosaccDry | rna-NM_001180066.1_ThermosaccDry | cds-NP_010277.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:442238-443551:+ | gene-YDL007W_VR1 | rna-NM_001180066.1_VR1 | cds-NP_010277.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:435678-436991:+ | gene-YDL007W_ZTW1 | rna-NM_001180066.1_ZTW1 | cds-NP_010277.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:440062-441375:+ | gene-YDL007W_Sparadoxus | rna-NM_001180066.1_Sparadoxus | cds-NP_010277.1_Sparadoxus | 94.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |