Gene name: RPT1
Reference locus (S288C): YKL145W
Gene biotype: protein_coding
Description: ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; required for optimal CDC20 transcription; interacts with Rpn12p and Ubr1p; mutant has aneuploidy tolerance
Top 10 interactors (score): RPN1 (0.999); PRE5 (0.999); NAS6 (0.999); RPT2 (0.999); HSM3 (0.999); SCL1 (0.999); RPN3 (0.999); PRE8 (0.999); RPN13 (0.999); SEM1 (0.999); RPN6 (0.999); RPN2 (0.999); PUP3 (0.999); PRE1 (0.999); PRE7 (0.999); PRE4 (0.999); RPT3 (0.999); RPT4 (0.999); RPT6 (0.999); PRE10 (0.999)
Homologues (species, bitscore): PSMC2 (Homo sapiens, 670.6); Psmc2 (Mus musculus, 671.0); psmc2 (Danio rerio, 669.5); psmc2 (Xenopus tropicalis, 668.3); Rpt1 (Drosophila melanogaster, 651.4); rpt-1 (Caenorhabditis elegans, 659.1); RPT1A (Arabidopsis thaliana, 654.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:161091-162494:+ | gene-YKL145W_AKU4011 | rna-NM_001179711.1_AKU4011 | cds-NP_012777.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:138223-139626:+ | gene-YKL145W_BG1 | rna-NM_001179711.1_BG1 | cds-NP_012777.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:178752-180155:+ | gene-YKL145W_Bruggeman | rna-NM_001179711.1_Bruggeman | cds-NP_012777.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:174077-175480:+ | gene-YKL145W_CAT1 | rna-NM_001179711.1_CAT1 | cds-NP_012777.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:173322-174725:+ | gene-YKL145W_CBS1585 | rna-NM_001179711.1_CBS1585 | cds-NP_012777.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:171922-173325:+ | gene-YKL145W_CBS436 | rna-NM_001179711.1_CBS436 | cds-NP_012777.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:158336-159739:+ | gene-YKL145W_CBS6412 | rna-NM_001179711.1_CBS6412 | cds-NP_012777.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:173786-175189:+ | gene-YKL145W_CBS6413 | rna-NM_001179711.1_CBS6413 | cds-NP_012777.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:173857-175260:+ | gene-YKL145W_CENPK1137D | rna-NM_001179711.1_CENPK1137D | cds-NP_012777.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:171825-173228:+ | gene-YKL145W_EthanolRed | rna-NM_001179711.1_EthanolRed | cds-NP_012777.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:172637-174040:+ | gene-YKL145W_FaliES1 | rna-NM_001179711.1_FaliES1 | cds-NP_012777.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000198.1:9350-10753:+ | gene-YKL145W_JAY291 | rna-NM_001179711.1_JAY291 | cds-NP_012777.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:180849-182252:+ | gene-YKL145W_MUCL30387 | rna-NM_001179711.1_MUCL30387 | cds-NP_012777.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:175201-176604:+ | gene-YKL145W_MUCL30388 | rna-NM_001179711.1_MUCL30388 | cds-NP_012777.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:173123-174526:+ | gene-YKL145W_MUCL39482 | rna-NM_001179711.1_MUCL39482 | cds-NP_012777.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:177512-178915:+ | gene-YKL145W_MUCL42920 | rna-NM_001179711.1_MUCL42920 | cds-NP_012777.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:174202-175605:+ | gene-YKL145W_NCIM3186 | rna-NM_001179711.1_NCIM3186 | cds-NP_012777.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:173313-174716:+ | gene-YKL145W_NCYC1407 | rna-NM_001179711.1_NCYC1407 | cds-NP_012777.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:180410-181813:+ | gene-YKL145W_PE2H3 | rna-NM_001179711.1_PE2H3 | cds-NP_012777.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:176704-178107:+ | gene-YKL145W_PE2H4 | rna-NM_001179711.1_PE2H4 | cds-NP_012777.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:174213-175616:+ | gene-YKL145W_S288C | rna-NM_001179711.1_S288C | cds-NP_012777.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:90635-92038:+ | gene-YKL145W_SA1 | rna-NM_001179711.1_SA1 | cds-NP_012777.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:173337-174740:+ | gene-YKL145W_ThermosaccDry | rna-NM_001179711.1_ThermosaccDry | cds-NP_012777.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:172688-174091:+ | gene-YKL145W_VR1 | rna-NM_001179711.1_VR1 | cds-NP_012777.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:171870-173273:+ | gene-YKL145W_ZTW1 | rna-NM_001179711.1_ZTW1 | cds-NP_012777.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:188568-189971:+ | gene-YKL145W_Sparadoxus | rna-NM_001179711.1_Sparadoxus | cds-NP_012777.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |