Gene name: RPS8B
Reference locus (S288C): YER102W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S8, no bacterial homolog; RPS8B has a paralog, RPS8A, that arose from the whole genome duplication
Top 10 interactors (score): RPL13A (0.999); RPL1A (0.999); RPS14B (0.999); RPL15A (0.999); RPS18A (0.999); RPL16A (0.999); RPL6A (0.999); ENP1 (0.999); TMA19 (0.999); RPL30 (0.999); RPS4B (0.999); RPS11A (0.999); RPS10A (0.999); RPS12 (0.999); RPL19A (0.999); RPS16B (0.999); RPS8A (0.999); RPS4A (0.999); RPS10B (0.999); RPS23A (0.999)
Homologues (species, bitscore): RPS8 (Homo sapiens, 255.4); Rps8 (Mus musculus, 255.4); rps8b (Danio rerio, 254.6); rps8 (Xenopus tropicalis, 253.8); RpS8 (Drosophila melanogaster, 265.8); rps-8 (Caenorhabditis elegans, 234.2); AT5G20290 (Arabidopsis thaliana, 244.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:356487-357338:+ | gene-YER102W_AKU4011 | rna-NM_001178993.1_AKU4011 | cds-NP_011028.1_AKU4011 | 70.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:68020-68622:- | gene-YER102W_BG1 | rna-NM_001178993.1_BG1 | cds-NP_011028.1_BG1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:366961-367812:+ | gene-YER102W_Bruggeman | rna-NM_001178993.1_Bruggeman | cds-NP_011028.1_Bruggeman | 70.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:361245-362096:+ | gene-YER102W_CAT1 | rna-NM_001178993.1_CAT1 | cds-NP_011028.1_CAT1 | 70.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:356352-356982:+ | gene-YER102W_CBS1585 | rna-NM_001178993.1_CBS1585 | cds-NP_011028.1_CBS1585 | 95.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:358837-359439:+ | gene-YER102W_CBS436 | rna-NM_001178993.1_CBS436 | cds-NP_011028.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:355808-356309:+ | gene-YER102W_CBS6412 | rna-NM_001178993.1_CBS6412 | cds-NP_011028.1_CBS6412 | 76.3 | 82.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:361798-362649:+ | gene-YER102W_CBS6413 | rna-NM_001178993.1_CBS6413 | cds-NP_011028.1_CBS6413 | 70.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:356833-357427:+ | gene-YER102W_EthanolRed | rna-NM_001178993.1_EthanolRed | cds-NP_011028.1_EthanolRed | 98.6 | 98.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:357278-357908:+ | gene-YER102W_FaliES1 | rna-NM_001178993.1_FaliES1 | cds-NP_011028.1_FaliES1 | 95.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000207.1:1-440:+ | gene-YER102W_JAY291 | rna-NM_001178993.1_JAY291 | cds-NP_011028.1_JAY291 | 72.9 | 72.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:363909-364760:+ | gene-YER102W_MUCL30387 | rna-NM_001178993.1_MUCL30387 | cds-NP_011028.1_MUCL30387 | 70.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:358841-359692:+ | gene-YER102W_MUCL30388 | rna-NM_001178993.1_MUCL30388 | cds-NP_011028.1_MUCL30388 | 70.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:355376-356006:+ | gene-YER102W_MUCL39482 | rna-NM_001178993.1_MUCL39482 | cds-NP_011028.1_MUCL39482 | 95.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:363874-364498:+ | gene-YER102W_MUCL42920 | rna-NM_001178993.1_MUCL42920 | cds-NP_011028.1_MUCL42920 | 96.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:363099-363701:+ | gene-YER102W_NCIM3186 | rna-NM_001178993.1_NCIM3186 | cds-NP_011028.1_NCIM3186 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:360439-361290:+ | gene-YER102W_NCYC1407 | rna-NM_001178993.1_NCYC1407 | cds-NP_011028.1_NCYC1407 | 70.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:371477-372079:+ | gene-YER102W_PE2H3 | rna-NM_001178993.1_PE2H3 | cds-NP_011028.1_PE2H3 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:361418-362020:+ | gene-YER102W_PE2H4 | rna-NM_001178993.1_PE2H4 | cds-NP_011028.1_PE2H4 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:363100-363702:+ | gene-YER102W_S288C | rna-NM_001178993.1_S288C | cds-NP_011028.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:72717-73319:+ | gene-YER102W_SA1 | rna-NM_001178993.1_SA1 | cds-NP_011028.1_SA1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:358075-358705:+ | gene-YER102W_ThermosaccDry | rna-NM_001178993.1_ThermosaccDry | cds-NP_011028.1_ThermosaccDry | 95.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:359117-359767:+ | gene-YER102W_VR1 | rna-NM_001178993.1_VR1 | cds-NP_011028.1_VR1 | 92.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:355232-355834:+ | gene-YER102W_ZTW1 | rna-NM_001178993.1_ZTW1 | cds-NP_011028.1_ZTW1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:359155-359757:+ | gene-YER102W_Sparadoxus | rna-NM_001178993.1_Sparadoxus | cds-NP_011028.1_Sparadoxus | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |