Gene name: RPS8A
Reference locus (S288C): YBL072C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S8, no bacterial homolog; RPS8A has a paralog, RPS8B, that arose from the whole genome duplication
Top 10 interactors (score): RPS21B (0.999); RPL33A (0.999); RPS8B (0.999); RPS19A (0.999); RPP0 (0.999); RPL24A (0.999); RPL40A (0.999); RPS27A (0.999); RPL23A (0.999); RPS26A (0.999); RPP2A (0.999); RPL19B (0.999); RPL39 (0.999); RPL34A (0.999); RPL18B (0.999); RPL20B (0.999); RPS30A (0.999); RPL29 (0.999); RPS17B (0.999); RPL17A (0.999)
Homologues (species, bitscore): RPS8 (Homo sapiens, 255.4); Rps8 (Mus musculus, 255.4); rps8b (Danio rerio, 254.6); rps8 (Xenopus tropicalis, 253.8); RpS8 (Drosophila melanogaster, 265.8); rps-8 (Caenorhabditis elegans, 234.2); AT5G20290 (Arabidopsis thaliana, 244.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:82074-82704:- | gene-YBL072C_AKU4011 | rna-NM_001178312.1_AKU4011 | cds-NP_009481.1_AKU4011 | 95.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:72962-73564:- | gene-YBL072C_BG1 | rna-NM_001178312.1_BG1 | cds-NP_009481.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:82688-83318:- | gene-YBL072C_Bruggeman | rna-NM_001178312.1_Bruggeman | cds-NP_009481.1_Bruggeman | 95.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:85328-85958:- | gene-YBL072C_CAT1 | rna-NM_001178312.1_CAT1 | cds-NP_009481.1_CAT1 | 95.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:74420-75271:- | gene-YBL072C_CBS1585 | rna-NM_001178312.1_CBS1585 | cds-NP_009481.1_CBS1585 | 70.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:83177-83779:- | gene-YBL072C_CBS436 | rna-NM_001178312.1_CBS436 | cds-NP_009481.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:73178-73777:- | gene-YBL072C_CBS6412 | rna-NM_001178312.1_CBS6412 | cds-NP_009481.1_CBS6412 | 99.5 | 99.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:80219-80849:- | gene-YBL072C_CBS6413 | rna-NM_001178312.1_CBS6413 | cds-NP_009481.1_CBS6413 | 95.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:82273-82875:- | gene-YBL072C_CENPK1137D | rna-NM_001178312.1_CENPK1137D | cds-NP_009481.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:96186-96702:- | gene-YBL072C_EthanolRed | rna-NM_001178312.1_EthanolRed | cds-NP_009481.1_EthanolRed | 74.8 | 82.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:96704-97555:- | gene-YBL072C_FaliES1 | rna-NM_001178312.1_FaliES1 | cds-NP_009481.1_FaliES1 | 70.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:1-178:- | gene-YBL072C_JAY291 | rna-NM_001178312.1_JAY291 | cds-NP_009481.1_JAY291 | 29.5 | 29.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:81814-82402:- | gene-YBL072C_MUCL30387 | rna-NM_001178312.1_MUCL30387 | cds-NP_009481.1_MUCL30387 | 82.4 | 92.0 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:83341-83971:- | gene-YBL072C_MUCL30388 | rna-NM_001178312.1_MUCL30388 | cds-NP_009481.1_MUCL30388 | 95.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:74601-75452:- | gene-YBL072C_MUCL39482 | rna-NM_001178312.1_MUCL39482 | cds-NP_009481.1_MUCL39482 | 70.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:81437-81997:- | gene-YBL072C_MUCL42920 | rna-NM_001178312.1_MUCL42920 | cds-NP_009481.1_MUCL42920 | 86.2 | 92.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:88320-88922:- | gene-YBL072C_NCIM3186 | rna-NM_001178312.1_NCIM3186 | cds-NP_009481.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:75964-76594:- | gene-YBL072C_NCYC1407 | rna-NM_001178312.1_NCYC1407 | cds-NP_009481.1_NCYC1407 | 95.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:82251-82853:- | gene-YBL072C_PE2H3 | rna-NM_001178312.1_PE2H3 | cds-NP_009481.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:79895-80497:- | gene-YBL072C_PE2H4 | rna-NM_001178312.1_PE2H4 | cds-NP_009481.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:88523-89125:- | gene-YBL072C_S288C | rna-NM_001178312.1_S288C | cds-NP_009481.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:72629-73231:- | gene-YBL072C_SA1 | rna-NM_001178312.1_SA1 | cds-NP_009481.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:96665-97516:- | gene-YBL072C_ThermosaccDry | rna-NM_001178312.1_ThermosaccDry | cds-NP_009481.1_ThermosaccDry | 70.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:78843-79685:- | gene-YBL072C_VR1 | rna-NM_001178312.1_VR1 | cds-NP_009481.1_VR1 | 68.5 | 98.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:73633-74235:- | gene-YBL072C_ZTW1 | rna-NM_001178312.1_ZTW1 | cds-NP_009481.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:108300-108902:- | gene-YBL072C_Sparadoxus | rna-NM_001178312.1_Sparadoxus | cds-NP_009481.1_Sparadoxus | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |