Gene name: RPS7B
Reference locus (S288C): YNL096C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; interacts with Kti11p; deletion causes hypersensitivity to zymocin; homologous to mammalian ribosomal protein S7, no bacterial homolog; RPS7B has a paralog, RPS7A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPS14A (0.999); RPS15 (0.999); RPS9A (0.999); RPL28 (0.999); RPS28A (0.999); RPS9B (0.999); RPL26A (0.999); RPL5 (0.999); RPS24A (0.999); RPS24B (0.999); RPS6B (0.999); RPS0B (0.999); RPL7B (0.999); RPS18B (0.999); RPL36A (0.999); RPS5 (0.999); RPL38 (0.999); RPS27B (0.999); RPS7A (0.999); RPL9A (0.999)
Homologues (species, bitscore): RPS7 (Homo sapiens, 199.9); Rps7 (Mus musculus, 199.9); rps7 (Danio rerio, 194.5); rps7 (Xenopus tropicalis, 201.4); RpS7 (Drosophila melanogaster, 147.5); rps-7 (Caenorhabditis elegans, 169.5); AT1G48830 (Arabidopsis thaliana, 182.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:437042-437959:- | gene-YNL096C_AKU4011 | rna-NM_001182934.3_AKU4011 | cds-NP_014303.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:341129-342046:- | gene-YNL096C_BG1 | rna-NM_001182934.3_BG1 | cds-NP_014303.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:447763-448680:- | gene-YNL096C_Bruggeman | rna-NM_001182934.3_Bruggeman | cds-NP_014303.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:490791-491708:- | gene-YNL096C_CAT1 | rna-NM_001182934.3_CAT1 | cds-NP_014303.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:437643-438559:- | gene-YNL096C_CBS1585 | rna-NM_001182934.3_CBS1585 | cds-NP_014303.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:506079-506996:- | gene-YNL096C_CBS436 | rna-NM_001182934.3_CBS436 | cds-NP_014303.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:432808-433725:- | gene-YNL096C_CBS6412 | rna-NM_001182934.3_CBS6412 | cds-NP_014303.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:434124-435041:- | gene-YNL096C_CBS6413 | rna-NM_001182934.3_CBS6413 | cds-NP_014303.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:437223-438140:- | gene-YNL096C_CENPK1137D | rna-NM_001182934.3_CENPK1137D | cds-NP_014303.3_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:439867-440784:- | gene-YNL096C_EthanolRed | rna-NM_001182934.3_EthanolRed | cds-NP_014303.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:430396-431313:- | gene-YNL096C_FaliES1 | rna-NM_001182934.3_FaliES1 | cds-NP_014303.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000317.1:42283-43200:+ | gene-YNL096C_JAY291 | rna-NM_001182934.3_JAY291 | cds-NP_014303.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:443937-444854:- | gene-YNL096C_MUCL30387 | rna-NM_001182934.3_MUCL30387 | cds-NP_014303.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:479313-480230:- | gene-YNL096C_MUCL30388 | rna-NM_001182934.3_MUCL30388 | cds-NP_014303.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:435047-435963:- | gene-YNL096C_MUCL39482 | rna-NM_001182934.3_MUCL39482 | cds-NP_014303.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:439059-439976:- | gene-YNL096C_MUCL42920 | rna-NM_001182934.3_MUCL42920 | cds-NP_014303.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:443367-444284:- | gene-YNL096C_NCIM3186 | rna-NM_001182934.3_NCIM3186 | cds-NP_014303.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:437164-438081:- | gene-YNL096C_NCYC1407 | rna-NM_001182934.3_NCYC1407 | cds-NP_014303.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:440404-441321:- | gene-YNL096C_PE2H3 | rna-NM_001182934.3_PE2H3 | cds-NP_014303.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:435475-436392:- | gene-YNL096C_PE2H4 | rna-NM_001182934.3_PE2H4 | cds-NP_014303.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:443398-444315:- | gene-YNL096C_S288C | rna-NM_001182934.3_S288C | cds-NP_014303.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:28340-29257:- | gene-YNL096C_SA1 | rna-NM_001182934.3_SA1 | cds-NP_014303.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:431271-432188:- | gene-YNL096C_ThermosaccDry | rna-NM_001182934.3_ThermosaccDry | cds-NP_014303.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:450382-451299:- | gene-YNL096C_VR1 | rna-NM_001182934.3_VR1 | cds-NP_014303.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:340621-341538:- | gene-YNL096C_ZTW1 | rna-NM_001182934.3_ZTW1 | cds-NP_014303.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:446744-447652:- | gene-YNL096C_Sparadoxus | rna-NM_001182934.3_Sparadoxus | cds-NP_014303.3_Sparadoxus | 97.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |