Gene name: RPS6B
Reference locus (S288C): YBR181C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S6, no bacterial homolog; phosphorylated on S233 by Ypk3p in a TORC1-dependent manner, and on S232 in a TORC1/2-dependent manner by Ypk1/2/3p; RPS6B has a paralog, RPS6A, that arose from the whole genome duplication
Top 10 interactors (score): RPS25A (0.999); RPS28B (0.999); RPL42B (0.999); RPS0A (0.999); RPL24B (0.999); RPL8A (0.999); RPL21A (0.999); RPS1B (0.999); RPL22A (0.999); RPL25 (0.999); RPS21A (0.999); RPS1A (0.999); RPL43A (0.999); RPL18A (0.999); RPS29A (0.999); RPS23B (0.999); RPS17A (0.999); RPS30B (0.999); RPL11A (0.999); RPS20 (0.999)
Homologues (species, bitscore): RPS6 (Homo sapiens, 296.2); Rps6 (Mus musculus, 296.2); rps6 (Danio rerio, 297.7); rps6 (Xenopus tropicalis, 290.0); RpS6 (Drosophila melanogaster, 290.4); rps-6 (Caenorhabditis elegans, 248.4); RPS6A (Arabidopsis thaliana, 256.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:574583-576143:- | gene-YBR181C_AKU4011 | rna-NM_001178529.3_AKU4011 | cds-NP_009740.3_AKU4011 | 58.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:565061-566122:- | gene-YBR181C_BG1 | rna-NM_001178529.3_BG1 | cds-NP_009740.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:380940-382002:- | gene-YBR181C_Bruggeman | rna-NM_001178529.3_Bruggeman | cds-NP_009740.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:580346-581407:- | gene-YBR181C_CAT1 | rna-NM_001178529.3_CAT1 | cds-NP_009740.3_CAT1 | 59.7 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:566364-567924:- | gene-YBR181C_CBS1585 | rna-NM_001178529.3_CBS1585 | cds-NP_009740.3_CBS1585 | 58.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:574414-575474:- | gene-YBR181C_CBS436 | rna-NM_001178529.3_CBS436 | cds-NP_009740.3_CBS436 | 87.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000066.1:1-404:+ | gene-YBR181C_CBS6412 | rna-NM_001178529.3_CBS6412 | cds-NP_009740.3_CBS6412 | 56.8 | 56.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:572169-573729:- | gene-YBR181C_CBS6413 | rna-NM_001178529.3_CBS6413 | cds-NP_009740.3_CBS6413 | 58.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:585509-586548:- | gene-YBR181C_CENPK1137D | rna-NM_001178529.3_CENPK1137D | cds-NP_009740.3_CENPK1137D | 55.6 | 96.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:700424-701305:- | gene-YBR181C_EthanolRed | rna-NM_001178529.3_EthanolRed | cds-NP_009740.3_EthanolRed | 74.6 | 74.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:590935-592216:- | gene-YBR181C_FaliES1 | rna-NM_001178529.3_FaliES1 | cds-NP_009740.3_FaliES1 | 69.9 | 95.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000104.1:14033-14444:+ | gene-YBR181C_JAY291 | rna-NM_001178529.3_JAY291 | cds-NP_009740.3_JAY291 | 8.5 | 8.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:579621-580682:- | gene-YBR181C_MUCL30387 | rna-NM_001178529.3_MUCL30387 | cds-NP_009740.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:596696-597758:- | gene-YBR181C_MUCL30388 | rna-NM_001178529.3_MUCL30388 | cds-NP_009740.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:564737-566297:- | gene-YBR181C_MUCL39482 | rna-NM_001178529.3_MUCL39482 | cds-NP_009740.3_MUCL39482 | 58.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:574662-575723:- | gene-YBR181C_MUCL42920 | rna-NM_001178529.3_MUCL42920 | cds-NP_009740.3_MUCL42920 | 83.1 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:591509-592571:- | gene-YBR181C_NCIM3186 | rna-NM_001178529.3_NCIM3186 | cds-NP_009740.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:567307-568405:- | gene-YBR181C_NCYC1407 | rna-NM_001178529.3_NCYC1407 | cds-NP_009740.3_NCYC1407 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:579933-580994:- | gene-YBR181C_PE2H3 | rna-NM_001178529.3_PE2H3 | cds-NP_009740.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:577609-578670:- | gene-YBR181C_PE2H4 | rna-NM_001178529.3_PE2H4 | cds-NP_009740.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:591712-592774:- | gene-YBR181C_S288C | rna-NM_001178529.3_S288C | cds-NP_009740.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:112924-113054:- | gene-YBR181C_SA1 | rna-NM_001178529.3_SA1 | cds-NP_009740.3_SA1 | 18.4 | 18.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:589945-591226:- | gene-YBR181C_ThermosaccDry | rna-NM_001178529.3_ThermosaccDry | cds-NP_009740.3_ThermosaccDry | 69.9 | 95.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:571333-572394:- | gene-YBR181C_VR1 | rna-NM_001178529.3_VR1 | cds-NP_009740.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:564782-565844:- | gene-YBR181C_ZTW1 | rna-NM_001178529.3_ZTW1 | cds-NP_009740.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:606543-607604:- | gene-YBR181C_Sparadoxus | rna-NM_001178529.3_Sparadoxus | cds-NP_009740.3_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |