Gene name: RPS6A
Reference locus (S288C): YPL090C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S6, no bacterial homolog; phosphorylated on S233 by Ypk3p in a TORC1-dependent manner, and on S232 in a TORC1/2-dependent manner by Ypk1/2/3p; RPS6A has a paralog, RPS6B, that arose from the whole genome duplication
Top 10 interactors (score): RPL38 (0.999); RPS5 (0.999); RPS7A (0.999); RPL9A (0.999); RPL12B (0.999); RPL14A (0.999); RPS27B (0.999); RPS24B (0.999); RPS24A (0.999); RPL43B (0.999); RPL5 (0.999); RPL1B (0.999); RPL36A (0.999); RPS18B (0.999); RPL23B (0.999); RPL7B (0.999); RPS0B (0.999); RPL37A (0.999); RPL6B (0.999); RPL2B (0.999)
Homologues (species, bitscore): RPS6 (Homo sapiens, 296.2); Rps6 (Mus musculus, 296.2); rps6 (Danio rerio, 297.7); rps6 (Xenopus tropicalis, 290.0); RpS6 (Drosophila melanogaster, 290.4); rps-6 (Caenorhabditis elegans, 248.4); RPS6A (Arabidopsis thaliana, 256.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:354933-356121:- | gene-YPL090C_AKU4011 | rna-NM_001183904.1_AKU4011 | cds-NP_015235.1_AKU4011 | 89.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:560690-561794:- | gene-YPL090C_BG1 | rna-NM_001183904.1_BG1 | cds-NP_015235.1_BG1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000030.1:1-796:- | gene-YPL090C_Bruggeman | rna-NM_001183904.1_Bruggeman | cds-NP_015235.1_Bruggeman | 56.3 | 56.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:471688-472792:- | gene-YPL090C_CAT1 | rna-NM_001183904.1_CAT1 | cds-NP_015235.1_CAT1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:359008-360196:- | gene-YPL090C_CBS1585 | rna-NM_001183904.1_CBS1585 | cds-NP_015235.1_CBS1585 | 89.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:373679-374728:- | gene-YPL090C_CBS436 | rna-NM_001183904.1_CBS436 | cds-NP_015235.1_CBS436 | 91.8 | 92.2 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:363676-364394:- | gene-YPL090C_CBS6412 | rna-NM_001183904.1_CBS6412 | cds-NP_015235.1_CBS6412 | 73.1 | 83.5 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:355642-356745:- | gene-YPL090C_CBS6413 | rna-NM_001183904.1_CBS6413 | cds-NP_015235.1_CBS6413 | 92.4 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:377239-378363:- | gene-YPL090C_CENPK1137D | rna-NM_001183904.1_CENPK1137D | cds-NP_015235.1_CENPK1137D | 97.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | MBWB01000066.1:1-518:- | gene-YPL090C_EthanolRed | rna-NM_001183904.1_EthanolRed | cds-NP_015235.1_EthanolRed | 72.5 | 72.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:361217-362320:- | gene-YPL090C_FaliES1 | rna-NM_001183904.1_FaliES1 | cds-NP_015235.1_FaliES1 | 93.9 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:3493-4598:+ | gene-YPL090C_JAY291 | rna-NM_001183904.1_JAY291 | cds-NP_015235.1_JAY291 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:372178-373281:- | gene-YPL090C_MUCL30387 | rna-NM_001183904.1_MUCL30387 | cds-NP_015235.1_MUCL30387 | 94.5 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:578546-579163:- | gene-YPL090C_MUCL30388 | rna-NM_001183904.1_MUCL30388 | cds-NP_015235.1_MUCL30388 | 70.4 | 84.0 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:352337-353525:- | gene-YPL090C_MUCL39482 | rna-NM_001183904.1_MUCL39482 | cds-NP_015235.1_MUCL39482 | 89.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:410274-411378:- | gene-YPL090C_MUCL42920 | rna-NM_001183904.1_MUCL42920 | cds-NP_015235.1_MUCL42920 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:377274-378378:- | gene-YPL090C_NCIM3186 | rna-NM_001183904.1_NCIM3186 | cds-NP_015235.1_NCIM3186 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:358788-360141:- | gene-YPL090C_NCYC1407 | rna-NM_001183904.1_NCYC1407 | cds-NP_015235.1_NCYC1407 | 73.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:366281-367385:- | gene-YPL090C_PE2H3 | rna-NM_001183904.1_PE2H3 | cds-NP_015235.1_PE2H3 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:365904-367008:- | gene-YPL090C_PE2H4 | rna-NM_001183904.1_PE2H4 | cds-NP_015235.1_PE2H4 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:377291-378395:- | gene-YPL090C_S288C | rna-NM_001183904.1_S288C | cds-NP_015235.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000138.1:1-131:+ | gene-YPL090C_SA1 | rna-NM_001183904.1_SA1 | cds-NP_015235.1_SA1 | 18.2 | 18.4 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:361015-362118:- | gene-YPL090C_ThermosaccDry | rna-NM_001183904.1_ThermosaccDry | cds-NP_015235.1_ThermosaccDry | 93.9 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:375994-377098:- | gene-YPL090C_VR1 | rna-NM_001183904.1_VR1 | cds-NP_015235.1_VR1 | 92.9 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:360335-361439:- | gene-YPL090C_ZTW1 | rna-NM_001183904.1_ZTW1 | cds-NP_015235.1_ZTW1 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:361966-363086:- | gene-YPL090C_Sparadoxus | rna-NM_001183904.1_Sparadoxus | cds-NP_015235.1_Sparadoxus | 97.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |