Gene name: RPS4B
Reference locus (S288C): YHR203C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4B has a paralog, RPS4A, that arose from the whole genome duplication
Top 10 interactors (score): RPL9B (0.999); RPS3 (0.999); RPL20A (0.999); RPL8B (0.999); RPL15A (0.999); RPL16A (0.999); RPS18A (0.999); RPL13A (0.999); RPL1A (0.999); RPS14B (0.999); RPL6A (0.999); RPL12A (0.999); RPS2 (0.999); RPL40B (0.999); RPL35A (0.999); RPL19A (0.999); RPS11A (0.999); RPS10A (0.999); RPS16B (0.999); RPS8A (0.999)
Homologues (species, bitscore): RPS4X (Homo sapiens, 403.3); Rps4x (Mus musculus, 403.3); rps4x (Danio rerio, 400.2); rps4x (Xenopus tropicalis, 400.2); RpS4 (Drosophila melanogaster, 407.5); rps-4 (Caenorhabditis elegans, 340.1); AT5G58420 (Arabidopsis thaliana, 362.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:491547-492584:- | gene-YHR203C_AKU4011 | rna-NM_001179334.1_AKU4011 | cds-NP_012073.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:25145-26199:+ | gene-YHR203C_BG1 | rna-NM_001179334.1_BG1 | cds-NP_012073.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:498794-500097:- | gene-YHR203C_Bruggeman | rna-NM_001179334.1_Bruggeman | cds-NP_012073.1_Bruggeman | 75.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:495324-496628:- | gene-YHR203C_CAT1 | rna-NM_001179334.1_CAT1 | cds-NP_012073.1_CAT1 | 75.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:491000-492037:- | gene-YHR203C_CBS1585 | rna-NM_001179334.1_CBS1585 | cds-NP_012073.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:488946-490134:- | gene-YHR203C_CBS436 | rna-NM_001179334.1_CBS436 | cds-NP_012073.1_CBS436 | 85.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:491099-492136:- | gene-YHR203C_CBS6412 | rna-NM_001179334.1_CBS6412 | cds-NP_012073.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:492393-493430:- | gene-YHR203C_CBS6413 | rna-NM_001179334.1_CBS6413 | cds-NP_012073.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:497662-498716:- | gene-YHR203C_CENPK1137D | rna-NM_001179334.1_CENPK1137D | cds-NP_012073.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:550089-551143:- | gene-YHR203C_EthanolRed | rna-NM_001179334.1_EthanolRed | cds-NP_012073.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:492533-493587:- | gene-YHR203C_FaliES1 | rna-NM_001179334.1_FaliES1 | cds-NP_012073.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000071.1:1-355:- | gene-YHR203C_JAY291 | rna-NM_001179334.1_JAY291 | cds-NP_012073.1_JAY291 | 10.8 | 10.8 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:500117-501171:- | gene-YHR203C_MUCL30387 | rna-NM_001179334.1_MUCL30387 | cds-NP_012073.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:499540-500832:- | gene-YHR203C_MUCL30388 | rna-NM_001179334.1_MUCL30388 | cds-NP_012073.1_MUCL30388 | 76.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:490911-492142:- | gene-YHR203C_MUCL39482 | rna-NM_001179334.1_MUCL39482 | cds-NP_012073.1_MUCL39482 | 80.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:506542-507490:- | gene-YHR203C_MUCL42920 | rna-NM_001179334.1_MUCL42920 | cds-NP_012073.1_MUCL42920 | 77.7 | 85.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:504358-505412:- | gene-YHR203C_NCIM3186 | rna-NM_001179334.1_NCIM3186 | cds-NP_012073.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:493377-494431:- | gene-YHR203C_NCYC1407 | rna-NM_001179334.1_NCYC1407 | cds-NP_012073.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:492537-493592:- | gene-YHR203C_PE2H3 | rna-NM_001179334.1_PE2H3 | cds-NP_012073.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:499964-501019:- | gene-YHR203C_PE2H4 | rna-NM_001179334.1_PE2H4 | cds-NP_012073.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:504476-505530:- | gene-YHR203C_S288C | rna-NM_001179334.1_S288C | cds-NP_012073.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000112.1:1-411:- | gene-YHR203C_SA1 | rna-NM_001179334.1_SA1 | cds-NP_012073.1_SA1 | 18.0 | 18.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:493616-494855:- | gene-YHR203C_ThermosaccDry | rna-NM_001179334.1_ThermosaccDry | cds-NP_012073.1_ThermosaccDry | 80.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:502838-503893:- | gene-YHR203C_VR1 | rna-NM_001179334.1_VR1 | cds-NP_012073.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:483852-484906:- | gene-YHR203C_ZTW1 | rna-NM_001179334.1_ZTW1 | cds-NP_012073.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:490550-491594:- | gene-YHR203C_Sparadoxus | rna-NM_001179334.1_Sparadoxus | cds-NP_012073.1_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |