Gene name: RPS4A
Reference locus (S288C): YJR145C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4A has a paralog, RPS4B, that arose from the whole genome duplication
Top 10 interactors (score): RPL14A (0.999); RPL31A (0.999); RPS7A (0.999); RPL12B (0.999); RPL9A (0.999); RPS27B (0.999); RPL38 (0.999); RPL1B (0.999); RPL37A (0.999); RPS5 (0.999); RPS18B (0.999); RPL36A (0.999); RPL23B (0.999); RPS0B (0.999); RPL7B (0.999); RPS6B (0.999); RPS24B (0.999); RPS24A (0.999); RPL43B (0.999); RPL5 (0.999)
Homologues (species, bitscore): RPS4X (Homo sapiens, 403.3); Rps4x (Mus musculus, 403.3); rps4x (Danio rerio, 400.2); rps4x (Xenopus tropicalis, 400.2); RpS4 (Drosophila melanogaster, 407.5); rps-4 (Caenorhabditis elegans, 340.1); AT5G58420 (Arabidopsis thaliana, 362.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:673508-674551:- | gene-YJR145C_AKU4011 | rna-NM_001181803.3_AKU4011 | cds-NP_012679.3_AKU4011 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000187.1:19676-20067:+ | gene-YJR145C_BG1 | rna-NM_001181803.3_BG1 | cds-NP_012679.3_BG1 | 17.3 | 17.3 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:689241-690401:- | gene-YJR145C_Bruggeman | rna-NM_001181803.3_Bruggeman | cds-NP_012679.3_Bruggeman | 86.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:693880-695014:- | gene-YJR145C_CAT1 | rna-NM_001181803.3_CAT1 | cds-NP_012679.3_CAT1 | 88.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:685556-686599:- | gene-YJR145C_CBS1585 | rna-NM_001181803.3_CBS1585 | cds-NP_012679.3_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:704443-705486:- | gene-YJR145C_CBS436 | rna-NM_001181803.3_CBS436 | cds-NP_012679.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:672329-673372:- | gene-YJR145C_CBS6412 | rna-NM_001181803.3_CBS6412 | cds-NP_012679.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:674988-676031:- | gene-YJR145C_CBS6413 | rna-NM_001181803.3_CBS6413 | cds-NP_012679.3_CBS6413 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:684908-685427:- | gene-YJR145C_CENPK1137D | rna-NM_001181803.3_CENPK1137D | cds-NP_012679.3_CENPK1137D | 33.5 | 33.5 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:677927-678970:- | gene-YJR145C_EthanolRed | rna-NM_001181803.3_EthanolRed | cds-NP_012679.3_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:689390-690586:- | gene-YJR145C_FaliES1 | rna-NM_001181803.3_FaliES1 | cds-NP_012679.3_FaliES1 | 83.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000095.1:1-342:- | gene-YJR145C_JAY291 | rna-NM_001181803.3_JAY291 | cds-NP_012679.3_JAY291 | 10.8 | 10.8 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:688267-689310:- | gene-YJR145C_MUCL30387 | rna-NM_001181803.3_MUCL30387 | cds-NP_012679.3_MUCL30387 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:685754-686797:- | gene-YJR145C_MUCL30388 | rna-NM_001181803.3_MUCL30388 | cds-NP_012679.3_MUCL30388 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:679039-680082:- | gene-YJR145C_MUCL39482 | rna-NM_001181803.3_MUCL39482 | cds-NP_012679.3_MUCL39482 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:498860-499903:- | gene-YJR145C_MUCL42920 | rna-NM_001181803.3_MUCL42920 | cds-NP_012679.3_MUCL42920 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:702006-703047:- | gene-YJR145C_NCIM3186 | rna-NM_001181803.3_NCIM3186 | cds-NP_012679.3_NCIM3186 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:676584-677851:- | gene-YJR145C_NCYC1407 | rna-NM_001181803.3_NCYC1407 | cds-NP_012679.3_NCYC1407 | 77.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:694793-695835:- | gene-YJR145C_PE2H3 | rna-NM_001181803.3_PE2H3 | cds-NP_012679.3_PE2H3 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:688482-689524:- | gene-YJR145C_PE2H4 | rna-NM_001181803.3_PE2H4 | cds-NP_012679.3_PE2H4 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:702027-703068:- | gene-YJR145C_S288C | rna-NM_001181803.3_S288C | cds-NP_012679.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000108.1:25405-25804:+ | gene-YJR145C_SA1 | rna-NM_001181803.3_SA1 | cds-NP_012679.3_SA1 | 18.0 | 18.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:683321-684613:- | gene-YJR145C_ThermosaccDry | rna-NM_001181803.3_ThermosaccDry | cds-NP_012679.3_ThermosaccDry | 75.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:685713-686755:- | gene-YJR145C_VR1 | rna-NM_001181803.3_VR1 | cds-NP_012679.3_VR1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:662669-663711:- | gene-YJR145C_ZTW1 | rna-NM_001181803.3_ZTW1 | cds-NP_012679.3_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:696959-698012:- | gene-YJR145C_Sparadoxus | rna-NM_001181803.3_Sparadoxus | cds-NP_012679.3_Sparadoxus | 97.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |