Gene name: RPS30B
Reference locus (S288C): YOR182C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S30, no bacterial homolog; RPS30B has a paralog, RPS30A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPS30A (0.999); RPL20B (0.999); RPL35B (0.999); RPS31 (0.999); RPL10 (0.999); ASC1 (0.999); RPL29 (0.999); RPL7A (0.999); RPS29A (0.999); RPS19A (0.999); RPL43A (0.999); RPL24A (0.999); RPP0 (0.999); RPL21A (0.999); RPS0A (0.999); RPL33A (0.999); RPL24B (0.999); RPL18A (0.999); RPS8B (0.999); RPS1A (0.999)
Homologues (species, bitscore): FAU (Homo sapiens, 68.2); Gm9843 (Mus musculus, 68.2); faua (Danio rerio, 69.7); MGC89853 (Xenopus tropicalis, 68.6); RpS30 (Drosophila melanogaster, 71.2); rps-30 (Caenorhabditis elegans, 73.2); AT2G19750.1 (Arabidopsis thaliana, 72.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:675521-676121:- | gene-YOR182C_AKU4011 | rna-NM_001183601.3_AKU4011 | cds-NP_014825.3_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:77578-78181:- | gene-YOR182C_BG1 | rna-NM_001183601.3_BG1 | cds-NP_014825.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:659533-660134:- | gene-YOR182C_Bruggeman | rna-NM_001183601.3_Bruggeman | cds-NP_014825.3_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:660706-661307:- | gene-YOR182C_CAT1 | rna-NM_001183601.3_CAT1 | cds-NP_014825.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:658510-659110:- | gene-YOR182C_CBS1585 | rna-NM_001183601.3_CBS1585 | cds-NP_014825.3_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:656632-657232:- | gene-YOR182C_CBS436 | rna-NM_001183601.3_CBS436 | cds-NP_014825.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:655626-656226:- | gene-YOR182C_CBS6412 | rna-NM_001183601.3_CBS6412 | cds-NP_014825.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:664267-664867:- | gene-YOR182C_CBS6413 | rna-NM_001183601.3_CBS6413 | cds-NP_014825.3_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:677941-678543:- | gene-YOR182C_CENPK1137D | rna-NM_001183601.3_CENPK1137D | cds-NP_014825.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:651497-652098:- | gene-YOR182C_EthanolRed | rna-NM_001183601.3_EthanolRed | cds-NP_014825.3_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:656570-657171:- | gene-YOR182C_FaliES1 | rna-NM_001183601.3_FaliES1 | cds-NP_014825.3_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000038.1:20366-20967:+ | gene-YOR182C_JAY291 | rna-NM_001183601.3_JAY291 | cds-NP_014825.3_JAY291 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:664338-664939:- | gene-YOR182C_MUCL30387 | rna-NM_001183601.3_MUCL30387 | cds-NP_014825.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:671754-672355:- | gene-YOR182C_MUCL30388 | rna-NM_001183601.3_MUCL30388 | cds-NP_014825.3_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:665839-666440:- | gene-YOR182C_MUCL39482 | rna-NM_001183601.3_MUCL39482 | cds-NP_014825.3_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:675226-675826:- | gene-YOR182C_MUCL42920 | rna-NM_001183601.3_MUCL42920 | cds-NP_014825.3_MUCL42920 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:678080-678682:- | gene-YOR182C_NCIM3186 | rna-NM_001183601.3_NCIM3186 | cds-NP_014825.3_NCIM3186 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:665937-666537:- | gene-YOR182C_NCYC1407 | rna-NM_001183601.3_NCYC1407 | cds-NP_014825.3_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:664764-665365:- | gene-YOR182C_PE2H3 | rna-NM_001183601.3_PE2H3 | cds-NP_014825.3_PE2H3 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:675141-675742:- | gene-YOR182C_PE2H4 | rna-NM_001183601.3_PE2H4 | cds-NP_014825.3_PE2H4 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:678191-678793:- | gene-YOR182C_S288C | rna-NM_001183601.3_S288C | cds-NP_014825.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:94758-95361:- | gene-YOR182C_SA1 | rna-NM_001183601.3_SA1 | cds-NP_014825.3_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:655754-656355:- | gene-YOR182C_ThermosaccDry | rna-NM_001183601.3_ThermosaccDry | cds-NP_014825.3_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:719791-720394:- | gene-YOR182C_VR1 | rna-NM_001183601.3_VR1 | cds-NP_014825.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:389161-389760:- | gene-YOR182C_ZTW1 | rna-NM_001183601.3_ZTW1 | cds-NP_014825.3_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:661398-661985:- | gene-YOR182C_Sparadoxus | rna-NM_001183601.3_Sparadoxus | cds-NP_014825.3_Sparadoxus | 97.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |