Gene name: RPS30A
Reference locus (S288C): YLR287C-A
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S30, no bacterial homolog; RPS30A has a paralog, RPS30B, that arose from the whole genome duplication
Top 10 interactors (score): RPL3 (0.999); RPL11B (0.999); RPS29B (0.999); RPS6A (0.999); RPS26B (0.999); RPL25 (0.999); RPL27A (0.999); RPS1B (0.999); RPS22B (0.999); RPL32 (0.999); RPL39 (0.999); RPS22A (0.999); RPS17A (0.999); RPS23B (0.999); RPS25B (0.999); RPS13 (0.999); RPS20 (0.999); RPS21A (0.999); RPL42A (0.999); RPL19B (0.999)
Homologues (species, bitscore): FAU (Homo sapiens, 68.2); Gm9843 (Mus musculus, 68.2); faua (Danio rerio, 69.7); MGC89853 (Xenopus tropicalis, 68.6); RpS30 (Drosophila melanogaster, 71.2); rps-30 (Caenorhabditis elegans, 73.2); AT2G19750.1 (Arabidopsis thaliana, 72.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:661339-661960:- | gene-YLR287C-A_AKU4011 | rna-NM_001182175.1_AKU4011 | cds-NP_013390.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:70732-71327:+ | gene-YLR287C-A_BG1 | rna-NM_001182175.1_BG1 | cds-NP_013390.1_BG1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:696295-697139:- | gene-YLR287C-A_Bruggeman | rna-NM_001182175.1_Bruggeman | cds-NP_013390.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:695113-695708:- | gene-YLR287C-A_CAT1 | rna-NM_001182175.1_CAT1 | cds-NP_013390.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:696275-696896:- | gene-YLR287C-A_CBS1585 | rna-NM_001182175.1_CBS1585 | cds-NP_013390.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:680891-681486:- | gene-YLR287C-A_CBS436 | rna-NM_001182175.1_CBS436 | cds-NP_013390.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:658908-659529:- | gene-YLR287C-A_CBS6412 | rna-NM_001182175.1_CBS6412 | cds-NP_013390.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:696940-697561:- | gene-YLR287C-A_CBS6413 | rna-NM_001182175.1_CBS6413 | cds-NP_013390.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:697135-697756:- | gene-YLR287C-A_CENPK1137D | rna-NM_001182175.1_CENPK1137D | cds-NP_013390.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:654618-655239:- | gene-YLR287C-A_EthanolRed | rna-NM_001182175.1_EthanolRed | cds-NP_013390.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:683818-684439:- | gene-YLR287C-A_FaliES1 | rna-NM_001182175.1_FaliES1 | cds-NP_013390.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000359.1:21332-21927:+ | gene-YLR287C-A_JAY291 | rna-NM_001182175.1_JAY291 | cds-NP_013390.1_JAY291 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:696435-697030:- | gene-YLR287C-A_MUCL30387 | rna-NM_001182175.1_MUCL30387 | cds-NP_013390.1_MUCL30387 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:701767-702611:- | gene-YLR287C-A_MUCL30388 | rna-NM_001182175.1_MUCL30388 | cds-NP_013390.1_MUCL30388 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:697506-698127:- | gene-YLR287C-A_MUCL39482 | rna-NM_001182175.1_MUCL39482 | cds-NP_013390.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:692684-693279:- | gene-YLR287C-A_MUCL42920 | rna-NM_001182175.1_MUCL42920 | cds-NP_013390.1_MUCL42920 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:712511-713132:- | gene-YLR287C-A_NCIM3186 | rna-NM_001182175.1_NCIM3186 | cds-NP_013390.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:706837-707458:- | gene-YLR287C-A_NCYC1407 | rna-NM_001182175.1_NCYC1407 | cds-NP_013390.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:694660-695255:- | gene-YLR287C-A_PE2H3 | rna-NM_001182175.1_PE2H3 | cds-NP_013390.1_PE2H3 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:694404-694999:- | gene-YLR287C-A_PE2H4 | rna-NM_001182175.1_PE2H4 | cds-NP_013390.1_PE2H4 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:712537-713158:- | gene-YLR287C-A_S288C | rna-NM_001182175.1_S288C | cds-NP_013390.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000039.1:71531-72126:+ | gene-YLR287C-A_SA1 | rna-NM_001182175.1_SA1 | cds-NP_013390.1_SA1 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:685713-686334:- | gene-YLR287C-A_ThermosaccDry | rna-NM_001182175.1_ThermosaccDry | cds-NP_013390.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:697625-698219:- | gene-YLR287C-A_VR1 | rna-NM_001182175.1_VR1 | cds-NP_013390.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:24148-24769:- | gene-YLR287C-A_ZTW1 | rna-NM_001182175.1_ZTW1 | cds-NP_013390.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:671808-672421:- | gene-YLR287C-A_Sparadoxus | rna-NM_001182175.1_Sparadoxus | cds-NP_013390.1_Sparadoxus | 95.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |