Gene name: RPS3
Reference locus (S288C): YNL178W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; nascent Rps3p is bound by specific chaperone Yar1p during translation; homologous to mammalian ribosomal protein S3 and bacterial S3
Top 10 interactors (score): RPL15B (0.999); RPL6B (0.999); RPL2B (0.999); RPS15 (0.999); RPS14A (0.999); RPP1A (0.999); RPS11B (0.999); RPL36B (0.999); RPL31A (0.999); FUN12 (0.999); RPS16A (0.999); RPS19B (0.999); RPS28A (0.999); RPS9B (0.999); RPL26A (0.999); RPL22B (0.999); RPS24B (0.999); RPS9A (0.999); EFT1 (0.999); RPL28 (0.999)
Homologues (species, bitscore): RPS3 (Homo sapiens, 302.0); Rps3 (Mus musculus, 312.8); rps3 (Danio rerio, 313.2); rps3 (Xenopus tropicalis, 309.7); RpS3 (Drosophila melanogaster, 311.2); rps-3 (Caenorhabditis elegans, 283.5); AT3G53870 (Arabidopsis thaliana, 320.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:296413-297135:+ | gene-YNL178W_AKU4011 | rna-NM_001183016.3_AKU4011 | cds-NP_014221.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:200375-201097:+ | gene-YNL178W_BG1 | rna-NM_001183016.3_BG1 | cds-NP_014221.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:306462-307184:+ | gene-YNL178W_Bruggeman | rna-NM_001183016.3_Bruggeman | cds-NP_014221.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:348755-349477:+ | gene-YNL178W_CAT1 | rna-NM_001183016.3_CAT1 | cds-NP_014221.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:297065-297787:+ | gene-YNL178W_CBS1585 | rna-NM_001183016.3_CBS1585 | cds-NP_014221.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:365381-366103:+ | gene-YNL178W_CBS436 | rna-NM_001183016.3_CBS436 | cds-NP_014221.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:292470-293192:+ | gene-YNL178W_CBS6412 | rna-NM_001183016.3_CBS6412 | cds-NP_014221.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:293498-294220:+ | gene-YNL178W_CBS6413 | rna-NM_001183016.3_CBS6413 | cds-NP_014221.3_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:296499-297221:+ | gene-YNL178W_CENPK1137D | rna-NM_001183016.3_CENPK1137D | cds-NP_014221.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:293386-294108:+ | gene-YNL178W_EthanolRed | rna-NM_001183016.3_EthanolRed | cds-NP_014221.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:289299-290021:+ | gene-YNL178W_FaliES1 | rna-NM_001183016.3_FaliES1 | cds-NP_014221.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:28487-29209:- | gene-YNL178W_JAY291 | rna-NM_001183016.3_JAY291 | cds-NP_014221.3_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:302276-302998:+ | gene-YNL178W_MUCL30387 | rna-NM_001183016.3_MUCL30387 | cds-NP_014221.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:336581-337303:+ | gene-YNL178W_MUCL30388 | rna-NM_001183016.3_MUCL30388 | cds-NP_014221.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:294304-295026:+ | gene-YNL178W_MUCL39482 | rna-NM_001183016.3_MUCL39482 | cds-NP_014221.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:296698-297420:+ | gene-YNL178W_MUCL42920 | rna-NM_001183016.3_MUCL42920 | cds-NP_014221.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:302649-303371:+ | gene-YNL178W_NCIM3186 | rna-NM_001183016.3_NCIM3186 | cds-NP_014221.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:296398-297120:+ | gene-YNL178W_NCYC1407 | rna-NM_001183016.3_NCYC1407 | cds-NP_014221.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:293349-294071:+ | gene-YNL178W_PE2H3 | rna-NM_001183016.3_PE2H3 | cds-NP_014221.3_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:292737-293459:+ | gene-YNL178W_PE2H4 | rna-NM_001183016.3_PE2H4 | cds-NP_014221.3_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:302680-303402:+ | gene-YNL178W_S288C | rna-NM_001183016.3_S288C | cds-NP_014221.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:110171-110893:- | gene-YNL178W_SA1 | rna-NM_001183016.3_SA1 | cds-NP_014221.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:290156-290878:+ | gene-YNL178W_ThermosaccDry | rna-NM_001183016.3_ThermosaccDry | cds-NP_014221.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:308674-309396:+ | gene-YNL178W_VR1 | rna-NM_001183016.3_VR1 | cds-NP_014221.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:199981-200703:+ | gene-YNL178W_ZTW1 | rna-NM_001183016.3_ZTW1 | cds-NP_014221.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:300723-301445:+ | gene-YNL178W_Sparadoxus | rna-NM_001183016.3_Sparadoxus | cds-NP_014221.3_Sparadoxus | 97.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |