Gene name: RPS29B
Reference locus (S288C): YDL061C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S29 and bacterial S14; RPS29B has a paralog, RPS29A, that arose from the whole genome duplication
Top 10 interactors (score): RPS30A (0.999); RPP0 (0.999); RPL24A (0.999); RPS19A (0.999); RPS8B (0.999); RPL33A (0.999); RPL29 (0.999); RPL17A (0.999); RPS26A (0.999); RPL23A (0.999); RPL39 (0.999); RPL32 (0.999); RPS22B (0.999); RPS22A (0.999); RPL2A (0.999); RPS25B (0.999); RPS13 (0.999); RPS21B (0.999); RPS17B (0.999); RPS27A (0.999)
Homologues (species, bitscore): RPS29 (Homo sapiens, 80.1); Gm10126 (Mus musculus, 81.3); rps29 (Danio rerio, 79.7); rps29 (Xenopus tropicalis, 80.9); RpS29 (Drosophila melanogaster, 82.4); rps-29 (Caenorhabditis elegans, 85.5); RPS29A (Arabidopsis thaliana, 81.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:325218-325388:- | gene-YDL061C_AKU4011 | rna-NM_001180120.1_AKU4011 | cds-NP_010222.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:224651-224821:+ | gene-YDL061C_BG1 | rna-NM_001180120.1_BG1 | cds-NP_010222.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:343009-343179:- | gene-YDL061C_Bruggeman | rna-NM_001180120.1_Bruggeman | cds-NP_010222.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:339367-339537:- | gene-YDL061C_CAT1 | rna-NM_001180120.1_CAT1 | cds-NP_010222.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:323471-323641:- | gene-YDL061C_CBS1585 | rna-NM_001180120.1_CBS1585 | cds-NP_010222.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:340178-340348:- | gene-YDL061C_CBS436 | rna-NM_001180120.1_CBS436 | cds-NP_010222.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:321566-321736:- | gene-YDL061C_CBS6412 | rna-NM_001180120.1_CBS6412 | cds-NP_010222.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:341556-341726:- | gene-YDL061C_CBS6413 | rna-NM_001180120.1_CBS6413 | cds-NP_010222.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:339448-339618:- | gene-YDL061C_CENPK1137D | rna-NM_001180120.1_CENPK1137D | cds-NP_010222.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:336021-336191:- | gene-YDL061C_EthanolRed | rna-NM_001180120.1_EthanolRed | cds-NP_010222.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:342268-342438:- | gene-YDL061C_FaliES1 | rna-NM_001180120.1_FaliES1 | cds-NP_010222.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:112291-112461:- | gene-YDL061C_JAY291 | rna-NM_001180120.1_JAY291 | cds-NP_010222.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:340400-340570:- | gene-YDL061C_MUCL30387 | rna-NM_001180120.1_MUCL30387 | cds-NP_010222.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:331526-331696:- | gene-YDL061C_MUCL30388 | rna-NM_001180120.1_MUCL30388 | cds-NP_010222.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:324581-324751:- | gene-YDL061C_MUCL39482 | rna-NM_001180120.1_MUCL39482 | cds-NP_010222.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:246596-246766:- | gene-YDL061C_MUCL42920 | rna-NM_001180120.1_MUCL42920 | cds-NP_010222.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:340551-340721:- | gene-YDL061C_NCIM3186 | rna-NM_001180120.1_NCIM3186 | cds-NP_010222.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:324606-324776:- | gene-YDL061C_NCYC1407 | rna-NM_001180120.1_NCYC1407 | cds-NP_010222.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:331410-331580:- | gene-YDL061C_PE2H3 | rna-NM_001180120.1_PE2H3 | cds-NP_010222.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:331410-331580:- | gene-YDL061C_PE2H4 | rna-NM_001180120.1_PE2H4 | cds-NP_010222.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:340628-340798:- | gene-YDL061C_S288C | rna-NM_001180120.1_S288C | cds-NP_010222.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:94136-94306:+ | gene-YDL061C_SA1 | rna-NM_001180120.1_SA1 | cds-NP_010222.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:341720-341890:- | gene-YDL061C_ThermosaccDry | rna-NM_001180120.1_ThermosaccDry | cds-NP_010222.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:344298-344468:- | gene-YDL061C_VR1 | rna-NM_001180120.1_VR1 | cds-NP_010222.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:339653-339823:- | gene-YDL061C_ZTW1 | rna-NM_001180120.1_ZTW1 | cds-NP_010222.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:341800-341970:- | gene-YDL061C_Sparadoxus | rna-NM_001180120.1_Sparadoxus | cds-NP_010222.1_Sparadoxus | 98.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |