Gene name: RPS29A
Reference locus (S288C): YLR388W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S29 and bacterial S14; RPS29A has a paralog, RPS29B, that arose from the whole genome duplication
Top 10 interactors (score): RPS31 (0.999); RPL10 (0.999); RPL8A (0.999); ASC1 (0.999); RPL35B (0.999); RPL43A (0.999); RPS1A (0.999); RPL18A (0.999); RPS0A (0.999); RPL24B (0.999); RPL21A (0.999); RPL25 (0.999); RPL22A (0.999); RPS1B (0.999); RPS23B (0.999); RPS17A (0.999); RPS30B (0.999); RPS21A (0.999); RPL11A (0.999); RPS20 (0.999)
Homologues (species, bitscore): RPS29 (Homo sapiens, 81.6); Gm10126 (Mus musculus, 83.2); rps29 (Danio rerio, 84.7); rps29 (Xenopus tropicalis, 82.8); RpS29 (Drosophila melanogaster, 86.7); rps-29 (Caenorhabditis elegans, 87.8); RPS29A (Arabidopsis thaliana, 83.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:848188-848358:+ | gene-YLR388W_AKU4011 | rna-NM_001182277.3_AKU4011 | cds-NP_013492.3_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:80367-80537:+ | gene-YLR388W_BG1 | rna-NM_001182277.3_BG1 | cds-NP_013492.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:886494-886664:+ | gene-YLR388W_Bruggeman | rna-NM_001182277.3_Bruggeman | cds-NP_013492.3_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:882020-882190:+ | gene-YLR388W_CAT1 | rna-NM_001182277.3_CAT1 | cds-NP_013492.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:883784-883954:+ | gene-YLR388W_CBS1585 | rna-NM_001182277.3_CBS1585 | cds-NP_013492.3_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:867425-867595:+ | gene-YLR388W_CBS436 | rna-NM_001182277.3_CBS436 | cds-NP_013492.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:919825-919995:+ | gene-YLR388W_CBS6412 | rna-NM_001182277.3_CBS6412 | cds-NP_013492.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:884075-884245:+ | gene-YLR388W_CBS6413 | rna-NM_001182277.3_CBS6413 | cds-NP_013492.3_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:883465-883635:+ | gene-YLR388W_CENPK1137D | rna-NM_001182277.3_CENPK1137D | cds-NP_013492.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:840731-840901:+ | gene-YLR388W_EthanolRed | rna-NM_001182277.3_EthanolRed | cds-NP_013492.3_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:870041-870211:+ | gene-YLR388W_FaliES1 | rna-NM_001182277.3_FaliES1 | cds-NP_013492.3_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:23198-23368:+ | gene-YLR388W_JAY291 | rna-NM_001182277.3_JAY291 | cds-NP_013492.3_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:885359-885529:+ | gene-YLR388W_MUCL30387 | rna-NM_001182277.3_MUCL30387 | cds-NP_013492.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:891445-891615:+ | gene-YLR388W_MUCL30388 | rna-NM_001182277.3_MUCL30388 | cds-NP_013492.3_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:885004-885174:+ | gene-YLR388W_MUCL39482 | rna-NM_001182277.3_MUCL39482 | cds-NP_013492.3_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:879661-879831:+ | gene-YLR388W_MUCL42920 | rna-NM_001182277.3_MUCL42920 | cds-NP_013492.3_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:898625-898795:+ | gene-YLR388W_NCIM3186 | rna-NM_001182277.3_NCIM3186 | cds-NP_013492.3_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:894184-894354:+ | gene-YLR388W_NCYC1407 | rna-NM_001182277.3_NCYC1407 | cds-NP_013492.3_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:880578-880748:+ | gene-YLR388W_PE2H3 | rna-NM_001182277.3_PE2H3 | cds-NP_013492.3_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:880322-880492:+ | gene-YLR388W_PE2H4 | rna-NM_001182277.3_PE2H4 | cds-NP_013492.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:898651-898821:+ | gene-YLR388W_S288C | rna-NM_001182277.3_S288C | cds-NP_013492.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:149866-150036:- | gene-YLR388W_SA1 | rna-NM_001182277.3_SA1 | cds-NP_013492.3_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:873120-873290:+ | gene-YLR388W_ThermosaccDry | rna-NM_001182277.3_ThermosaccDry | cds-NP_013492.3_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:885668-885838:+ | gene-YLR388W_VR1 | rna-NM_001182277.3_VR1 | cds-NP_013492.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:209836-210006:+ | gene-YLR388W_ZTW1 | rna-NM_001182277.3_ZTW1 | cds-NP_013492.3_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:858553-858723:+ | gene-YLR388W_Sparadoxus | rna-NM_001182277.3_Sparadoxus | cds-NP_013492.3_Sparadoxus | 97.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |