Gene name: RPS28B
Reference locus (S288C): YLR264W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S28, no bacterial homolog; has an extraribosomal function in autoregulation, in which Rps28Bp binds to a decapping complex via Edc3p, which then binds to RPS28B mRNA leading to its decapping and degradation; RPS28B has a paralog, RPS28A, that arose from the whole genome duplication
Top 10 interactors (score): RPL43A (0.999); RPS29A (0.999); RPL7A (0.999); ASC1 (0.999); RPS31 (0.999); RPL8A (0.999); RPL10 (0.999); RPL35B (0.999); RPS25A (0.999); RPL42B (0.999); RPS7B (0.999); RPS17A (0.999); RPS23B (0.999); RPS30B (0.999); RPS20 (0.999); RPS21A (0.999); RPL11A (0.999); RPS1B (0.999); RPL25 (0.999); RPL22A (0.999)
Homologues (species, bitscore): RPS28 (Homo sapiens, 99.4); Rps28 (Mus musculus, 99.4); rps28 (Danio rerio, 97.1); rps28p9 (Xenopus tropicalis, 97.1); RpS28b (Drosophila melanogaster, 92.0); rps-28 (Caenorhabditis elegans, 89.0); RPS28A (Arabidopsis thaliana, 85.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:621375-621578:+ | gene-YLR264W_AKU4011 | rna-NM_001182151.1_AKU4011 | cds-NP_013366.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:110301-110504:- | gene-YLR264W_BG1 | rna-NM_001182151.1_BG1 | cds-NP_013366.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:655636-655839:+ | gene-YLR264W_Bruggeman | rna-NM_001182151.1_Bruggeman | cds-NP_013366.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:654821-655024:+ | gene-YLR264W_CAT1 | rna-NM_001182151.1_CAT1 | cds-NP_013366.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:656870-657073:+ | gene-YLR264W_CBS1585 | rna-NM_001182151.1_CBS1585 | cds-NP_013366.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:641107-641310:+ | gene-YLR264W_CBS436 | rna-NM_001182151.1_CBS436 | cds-NP_013366.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:619845-620048:+ | gene-YLR264W_CBS6412 | rna-NM_001182151.1_CBS6412 | cds-NP_013366.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:657166-657369:+ | gene-YLR264W_CBS6413 | rna-NM_001182151.1_CBS6413 | cds-NP_013366.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:657707-657910:+ | gene-YLR264W_CENPK1137D | rna-NM_001182151.1_CENPK1137D | cds-NP_013366.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:615575-615778:+ | gene-YLR264W_EthanolRed | rna-NM_001182151.1_EthanolRed | cds-NP_013366.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:644406-644609:+ | gene-YLR264W_FaliES1 | rna-NM_001182151.1_FaliES1 | cds-NP_013366.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:14782-14985:- | gene-YLR264W_JAY291 | rna-NM_001182151.1_JAY291 | cds-NP_013366.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:656491-656694:+ | gene-YLR264W_MUCL30387 | rna-NM_001182151.1_MUCL30387 | cds-NP_013366.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:661261-661464:+ | gene-YLR264W_MUCL30388 | rna-NM_001182151.1_MUCL30388 | cds-NP_013366.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:657851-658054:+ | gene-YLR264W_MUCL39482 | rna-NM_001182151.1_MUCL39482 | cds-NP_013366.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:652637-652840:+ | gene-YLR264W_MUCL42920 | rna-NM_001182151.1_MUCL42920 | cds-NP_013366.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:673105-673308:+ | gene-YLR264W_NCIM3186 | rna-NM_001182151.1_NCIM3186 | cds-NP_013366.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:644839-645042:+ | gene-YLR264W_NCYC1407 | rna-NM_001182151.1_NCYC1407 | cds-NP_013366.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:648627-648830:+ | gene-YLR264W_PE2H3 | rna-NM_001182151.1_PE2H3 | cds-NP_013366.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:648371-648574:+ | gene-YLR264W_PE2H4 | rna-NM_001182151.1_PE2H4 | cds-NP_013366.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:673131-673334:+ | gene-YLR264W_S288C | rna-NM_001182151.1_S288C | cds-NP_013366.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:15027-15230:- | gene-YLR264W_SA1 | rna-NM_001182151.1_SA1 | cds-NP_013366.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:646359-646562:+ | gene-YLR264W_ThermosaccDry | rna-NM_001182151.1_ThermosaccDry | cds-NP_013366.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:657697-657900:+ | gene-YLR264W_VR1 | rna-NM_001182151.1_VR1 | cds-NP_013366.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:170659-170862:+ | gene-YLR264W_ZTW1 | rna-NM_001182151.1_ZTW1 | cds-NP_013366.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:632200-632403:+ | gene-YLR264W_Sparadoxus | rna-NM_001182151.1_Sparadoxus | cds-NP_013366.1_Sparadoxus | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |