Gene name: RPS28A
Reference locus (S288C): YOR167C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; has an extraribosomal function in regulation of RPS28B, in which Rps28Ap binds to a decapping complex via Edc3p, which then binds to RPS28B mRNA leading to its decapping and degradation; homologous to mammalian ribosomal protein S28, no bacterial homolog; RPS28A has a paralog, RPS28B, that arose from the whole genome duplication
Top 10 interactors (score): RPS15 (0.999); RPS9B (0.999); RPL31A (0.999); RPS16A (0.999); RPL40B (0.999); RPL9B (0.999); RPL35A (0.999); RPL20A (0.999); RPS19B (0.999); RPS2 (0.999); RPS3 (0.999); RPS14A (0.999); RPP1A (0.999); RPS11B (0.999); RPL15A (0.999); RPL16A (0.999); RPS18A (0.999); RPS14B (0.999); RPL27B (0.999); RPL1A (0.999)
Homologues (species, bitscore): RPS28 (Homo sapiens, 99.4); Rps28 (Mus musculus, 99.4); rps28 (Danio rerio, 97.1); rps28p9 (Xenopus tropicalis, 97.1); RpS28b (Drosophila melanogaster, 92.0); rps-28 (Caenorhabditis elegans, 88.6); RPS28A (Arabidopsis thaliana, 84.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:646442-646645:- | gene-YOR167C_AKU4011 | rna-NM_001183586.1_AKU4011 | cds-NP_014810.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:48197-48400:- | gene-YOR167C_BG1 | rna-NM_001183586.1_BG1 | cds-NP_014810.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:630516-630719:- | gene-YOR167C_Bruggeman | rna-NM_001183586.1_Bruggeman | cds-NP_014810.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:630535-630738:- | gene-YOR167C_CAT1 | rna-NM_001183586.1_CAT1 | cds-NP_014810.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:628937-629140:- | gene-YOR167C_CBS1585 | rna-NM_001183586.1_CBS1585 | cds-NP_014810.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:627232-627435:- | gene-YOR167C_CBS436 | rna-NM_001183586.1_CBS436 | cds-NP_014810.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:626549-626752:- | gene-YOR167C_CBS6412 | rna-NM_001183586.1_CBS6412 | cds-NP_014810.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:635230-635433:- | gene-YOR167C_CBS6413 | rna-NM_001183586.1_CBS6413 | cds-NP_014810.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:648563-648766:- | gene-YOR167C_CENPK1137D | rna-NM_001183586.1_CENPK1137D | cds-NP_014810.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:622646-622849:- | gene-YOR167C_EthanolRed | rna-NM_001183586.1_EthanolRed | cds-NP_014810.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:627499-627702:- | gene-YOR167C_FaliES1 | rna-NM_001183586.1_FaliES1 | cds-NP_014810.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:15839-16042:+ | gene-YOR167C_JAY291 | rna-NM_001183586.1_JAY291 | cds-NP_014810.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:635323-635526:- | gene-YOR167C_MUCL30387 | rna-NM_001183586.1_MUCL30387 | cds-NP_014810.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:642086-642289:- | gene-YOR167C_MUCL30388 | rna-NM_001183586.1_MUCL30388 | cds-NP_014810.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:636778-636981:- | gene-YOR167C_MUCL39482 | rna-NM_001183586.1_MUCL39482 | cds-NP_014810.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:646200-646403:- | gene-YOR167C_MUCL42920 | rna-NM_001183586.1_MUCL42920 | cds-NP_014810.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:648693-648896:- | gene-YOR167C_NCIM3186 | rna-NM_001183586.1_NCIM3186 | cds-NP_014810.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:636864-637067:- | gene-YOR167C_NCYC1407 | rna-NM_001183586.1_NCYC1407 | cds-NP_014810.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:635377-635580:- | gene-YOR167C_PE2H3 | rna-NM_001183586.1_PE2H3 | cds-NP_014810.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:645754-645957:- | gene-YOR167C_PE2H4 | rna-NM_001183586.1_PE2H4 | cds-NP_014810.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:648804-649007:- | gene-YOR167C_S288C | rna-NM_001183586.1_S288C | cds-NP_014810.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:65362-65565:- | gene-YOR167C_SA1 | rna-NM_001183586.1_SA1 | cds-NP_014810.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:626682-626885:- | gene-YOR167C_ThermosaccDry | rna-NM_001183586.1_ThermosaccDry | cds-NP_014810.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:690379-690582:- | gene-YOR167C_VR1 | rna-NM_001183586.1_VR1 | cds-NP_014810.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:360130-360333:- | gene-YOR167C_ZTW1 | rna-NM_001183586.1_ZTW1 | cds-NP_014810.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:631758-631961:- | gene-YOR167C_Sparadoxus | rna-NM_001183586.1_Sparadoxus | cds-NP_014810.1_Sparadoxus | 99.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |