Gene name: RPS27B
Reference locus (S288C): YHR021C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27B has a paralog, RPS27A, that arose from the whole genome duplication
Top 10 interactors (score): RPL5 (0.999); RPS24B (0.999); RPS24A (0.999); RPL43B (0.999); RPS18B (0.999); RPL36A (0.999); RPL36B (0.999); RPS16A (0.999); RPS6B (0.999); RPL31A (0.999); RPS19B (0.999); RPL9A (0.999); RPS7A (0.999); RPL14A (0.999); RPS5 (0.999); RPL37A (0.999); RPL31B (0.999); RPL38 (0.999); RPS0B (0.999); RPL26B (0.999)
Homologues (species, bitscore): RPS27 (Homo sapiens, 124.8); Rps27rt (Mus musculus, 124.8); rps27.1 (Danio rerio, 125.6); rps27 (Xenopus tropicalis, 120.9); RpS27 (Drosophila melanogaster, 125.2); rps-27 (Caenorhabditis elegans, 110.5); RS27A (Arabidopsis thaliana, 120.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:136067-136862:- | gene-YHR021C_AKU4011 | rna-NM_001179151.1_AKU4011 | cds-NP_011885.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:56358-57156:- | gene-YHR021C_BG1 | rna-NM_001179151.1_BG1 | cds-NP_011885.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:143129-143927:- | gene-YHR021C_Bruggeman | rna-NM_001179151.1_Bruggeman | cds-NP_011885.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:137977-138775:- | gene-YHR021C_CAT1 | rna-NM_001179151.1_CAT1 | cds-NP_011885.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:136399-137194:- | gene-YHR021C_CBS1585 | rna-NM_001179151.1_CBS1585 | cds-NP_011885.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:130749-131547:- | gene-YHR021C_CBS436 | rna-NM_001179151.1_CBS436 | cds-NP_011885.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:136089-136884:- | gene-YHR021C_CBS6412 | rna-NM_001179151.1_CBS6412 | cds-NP_011885.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:136221-137016:- | gene-YHR021C_CBS6413 | rna-NM_001179151.1_CBS6413 | cds-NP_011885.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:141042-141840:- | gene-YHR021C_CENPK1137D | rna-NM_001179151.1_CENPK1137D | cds-NP_011885.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:135613-136408:- | gene-YHR021C_EthanolRed | rna-NM_001179151.1_EthanolRed | cds-NP_011885.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:136592-137387:- | gene-YHR021C_FaliES1 | rna-NM_001179151.1_FaliES1 | cds-NP_011885.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000273.1:44213-45011:+ | gene-YHR021C_JAY291 | rna-NM_001179151.1_JAY291 | cds-NP_011885.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:142661-143460:- | gene-YHR021C_MUCL30387 | rna-NM_001179151.1_MUCL30387 | cds-NP_011885.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:143135-143933:- | gene-YHR021C_MUCL30388 | rna-NM_001179151.1_MUCL30388 | cds-NP_011885.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:135426-136221:- | gene-YHR021C_MUCL39482 | rna-NM_001179151.1_MUCL39482 | cds-NP_011885.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:141575-142373:- | gene-YHR021C_MUCL42920 | rna-NM_001179151.1_MUCL42920 | cds-NP_011885.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:147753-148551:- | gene-YHR021C_NCIM3186 | rna-NM_001179151.1_NCIM3186 | cds-NP_011885.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:135338-136133:- | gene-YHR021C_NCYC1407 | rna-NM_001179151.1_NCYC1407 | cds-NP_011885.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:137754-138552:- | gene-YHR021C_PE2H3 | rna-NM_001179151.1_PE2H3 | cds-NP_011885.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:145195-145993:- | gene-YHR021C_PE2H4 | rna-NM_001179151.1_PE2H4 | cds-NP_011885.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:147871-148669:- | gene-YHR021C_S288C | rna-NM_001179151.1_S288C | cds-NP_011885.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000106.1:1422-2217:- | gene-YHR021C_SA1 | rna-NM_001179151.1_SA1 | cds-NP_011885.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:137681-138476:- | gene-YHR021C_ThermosaccDry | rna-NM_001179151.1_ThermosaccDry | cds-NP_011885.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:144225-145023:- | gene-YHR021C_VR1 | rna-NM_001179151.1_VR1 | cds-NP_011885.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:129276-130074:- | gene-YHR021C_ZTW1 | rna-NM_001179151.1_ZTW1 | cds-NP_011885.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:135394-136199:- | gene-YHR021C_Sparadoxus | rna-NM_001179151.1_Sparadoxus | cds-NP_011885.1_Sparadoxus | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |