Gene name: RPS27A
Reference locus (S288C): YKL156W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S27, no bacterial homolog; RPS27A has a paralog, RPS27B, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPL32 (0.999); RPS22B (0.999); RPL3 (0.999); RPS29B (0.999); RPL11B (0.999); RPS6A (0.999); RPS26B (0.999); RPL27A (0.999); RPL14B (0.999); RPS8B (0.999); RPL33A (0.999); RPP0 (0.999); RPS19A (0.999); RPL29 (0.999); RPS30A (0.999); RPL40A (0.999); RPS21B (0.999); RPS17B (0.999); RPL17A (0.999); RPS26A (0.999)
Homologues (species, bitscore): RPS27 (Homo sapiens, 124.4); Rps27rt (Mus musculus, 124.4); rps27.1 (Danio rerio, 125.2); rps27 (Xenopus tropicalis, 120.9); RpS27 (Drosophila melanogaster, 125.9); rps-27 (Caenorhabditis elegans, 110.2); RS27A (Arabidopsis thaliana, 120.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:145504-146103:+ | gene-YKL156W_AKU4011 | rna-NM_001179722.1_AKU4011 | cds-NP_012766.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:122078-122676:+ | gene-YKL156W_BG1 | rna-NM_001179722.1_BG1 | cds-NP_012766.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:163162-163761:+ | gene-YKL156W_Bruggeman | rna-NM_001179722.1_Bruggeman | cds-NP_012766.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:157979-158577:+ | gene-YKL156W_CAT1 | rna-NM_001179722.1_CAT1 | cds-NP_012766.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:157727-158326:+ | gene-YKL156W_CBS1585 | rna-NM_001179722.1_CBS1585 | cds-NP_012766.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:156321-156920:+ | gene-YKL156W_CBS436 | rna-NM_001179722.1_CBS436 | cds-NP_012766.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:142753-143352:+ | gene-YKL156W_CBS6412 | rna-NM_001179722.1_CBS6412 | cds-NP_012766.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:158199-158798:+ | gene-YKL156W_CBS6413 | rna-NM_001179722.1_CBS6413 | cds-NP_012766.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:158260-158859:+ | gene-YKL156W_CENPK1137D | rna-NM_001179722.1_CENPK1137D | cds-NP_012766.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:156250-156849:+ | gene-YKL156W_EthanolRed | rna-NM_001179722.1_EthanolRed | cds-NP_012766.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:157062-157661:+ | gene-YKL156W_FaliES1 | rna-NM_001179722.1_FaliES1 | cds-NP_012766.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000239.2:16029-16627:+ | gene-YKL156W_JAY291 | rna-NM_001179722.1_JAY291 | cds-NP_012766.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:165260-165859:+ | gene-YKL156W_MUCL30387 | rna-NM_001179722.1_MUCL30387 | cds-NP_012766.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:159614-160213:+ | gene-YKL156W_MUCL30388 | rna-NM_001179722.1_MUCL30388 | cds-NP_012766.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:157537-158136:+ | gene-YKL156W_MUCL39482 | rna-NM_001179722.1_MUCL39482 | cds-NP_012766.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:161945-162544:+ | gene-YKL156W_MUCL42920 | rna-NM_001179722.1_MUCL42920 | cds-NP_012766.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:158602-159201:+ | gene-YKL156W_NCIM3186 | rna-NM_001179722.1_NCIM3186 | cds-NP_012766.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:157730-158329:+ | gene-YKL156W_NCYC1407 | rna-NM_001179722.1_NCYC1407 | cds-NP_012766.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:164805-165404:+ | gene-YKL156W_PE2H3 | rna-NM_001179722.1_PE2H3 | cds-NP_012766.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:161099-161698:+ | gene-YKL156W_PE2H4 | rna-NM_001179722.1_PE2H4 | cds-NP_012766.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:158613-159212:+ | gene-YKL156W_S288C | rna-NM_001179722.1_S288C | cds-NP_012766.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:75030-75629:+ | gene-YKL156W_SA1 | rna-NM_001179722.1_SA1 | cds-NP_012766.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:157762-158361:+ | gene-YKL156W_ThermosaccDry | rna-NM_001179722.1_ThermosaccDry | cds-NP_012766.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:156599-157197:+ | gene-YKL156W_VR1 | rna-NM_001179722.1_VR1 | cds-NP_012766.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:156284-156883:+ | gene-YKL156W_ZTW1 | rna-NM_001179722.1_ZTW1 | cds-NP_012766.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:172464-173067:+ | gene-YKL156W_Sparadoxus | rna-NM_001179722.1_Sparadoxus | cds-NP_012766.1_Sparadoxus | 93.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |