Gene name: RPS25B
Reference locus (S288C): YLR333C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S25, no bacterial homolog; RPS25B has a paralog, RPS25A, that arose from the whole genome duplication
Top 10 interactors (score): RPL15A (0.999); RPS15 (0.999); RPS14A (0.999); RPL6B (0.999); RPL1A (0.999); RPL27B (0.999); RPS14B (0.999); RPL16A (0.999); RPS18A (0.999); RPL36B (0.999); RPS16A (0.999); RPL31A (0.999); RPL8B (0.999); RPS2 (0.999); RPS3 (0.999); RPL20A (0.999); RPS19B (0.999); RPL35A (0.999); RPL9B (0.999); RPL40B (0.999)
Homologues (species, bitscore): RPS25 (Homo sapiens, 95.5); Rps25 (Mus musculus, 95.5); rps25 (Danio rerio, 92.4); rps25 (Xenopus tropicalis, 96.3); RpS25 (Drosophila melanogaster, 91.7); rps-25 (Caenorhabditis elegans, 88.2); AT2G21580 (Arabidopsis thaliana, 98.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:745097-745423:- | gene-YLR333C_AKU4011 | rna-NM_001182222.1_AKU4011 | cds-NP_013437.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:11664-11990:- | gene-YLR333C_BG1 | rna-NM_001182222.1_BG1 | cds-NP_013437.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:781445-781771:- | gene-YLR333C_Bruggeman | rna-NM_001182222.1_Bruggeman | cds-NP_013437.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:778405-778731:- | gene-YLR333C_CAT1 | rna-NM_001182222.1_CAT1 | cds-NP_013437.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:780150-780476:- | gene-YLR333C_CBS1585 | rna-NM_001182222.1_CBS1585 | cds-NP_013437.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:763461-763787:- | gene-YLR333C_CBS436 | rna-NM_001182222.1_CBS436 | cds-NP_013437.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:817143-817469:- | gene-YLR333C_CBS6412 | rna-NM_001182222.1_CBS6412 | cds-NP_013437.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:781013-781339:- | gene-YLR333C_CBS6413 | rna-NM_001182222.1_CBS6413 | cds-NP_013437.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:780190-780516:- | gene-YLR333C_CENPK1137D | rna-NM_001182222.1_CENPK1137D | cds-NP_013437.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:737315-737641:- | gene-YLR333C_EthanolRed | rna-NM_001182222.1_EthanolRed | cds-NP_013437.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:766516-766842:- | gene-YLR333C_FaliES1 | rna-NM_001182222.1_FaliES1 | cds-NP_013437.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:1104-1430:+ | gene-YLR333C_JAY291 | rna-NM_001182222.1_JAY291 | cds-NP_013437.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:779898-780224:- | gene-YLR333C_MUCL30387 | rna-NM_001182222.1_MUCL30387 | cds-NP_013437.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:785244-785570:- | gene-YLR333C_MUCL30388 | rna-NM_001182222.1_MUCL30388 | cds-NP_013437.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:781369-781695:- | gene-YLR333C_MUCL39482 | rna-NM_001182222.1_MUCL39482 | cds-NP_013437.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:776645-776971:- | gene-YLR333C_MUCL42920 | rna-NM_001182222.1_MUCL42920 | cds-NP_013437.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:795547-795873:- | gene-YLR333C_NCIM3186 | rna-NM_001182222.1_NCIM3186 | cds-NP_013437.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:790589-790915:- | gene-YLR333C_NCYC1407 | rna-NM_001182222.1_NCYC1407 | cds-NP_013437.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:777224-777550:- | gene-YLR333C_PE2H3 | rna-NM_001182222.1_PE2H3 | cds-NP_013437.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:776968-777294:- | gene-YLR333C_PE2H4 | rna-NM_001182222.1_PE2H4 | cds-NP_013437.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:795573-795899:- | gene-YLR333C_S288C | rna-NM_001182222.1_S288C | cds-NP_013437.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:253068-253394:+ | gene-YLR333C_SA1 | rna-NM_001182222.1_SA1 | cds-NP_013437.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:768408-768734:- | gene-YLR333C_ThermosaccDry | rna-NM_001182222.1_ThermosaccDry | cds-NP_013437.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:780976-781302:- | gene-YLR333C_VR1 | rna-NM_001182222.1_VR1 | cds-NP_013437.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:106797-107123:- | gene-YLR333C_ZTW1 | rna-NM_001182222.1_ZTW1 | cds-NP_013437.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:754490-754816:- | gene-YLR333C_Sparadoxus | rna-NM_001182222.1_Sparadoxus | cds-NP_013437.1_Sparadoxus | 96.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |