Gene name: RPS25A
Reference locus (S288C): YGR027C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S25, no bacterial homolog; RPS25A has a paralog, RPS25B, that arose from the whole genome duplication
Top 10 interactors (score): RPS22B (0.999); RPL32 (0.999); RPL8A (0.999); RPL18B (0.999); RPL34A (0.999); RPP2A (0.999); RPL39 (0.999); RPL19B (0.999); RPL42A (0.999); RPS29B (0.999); RPL11B (0.999); RPL3 (0.999); RPS1B (0.999); RPL27A (0.999); RPL14B (0.999); RPL22A (0.999); RPL25 (0.999); RPS26B (0.999); RPL4A (0.999); RPS6A (0.999)
Homologues (species, bitscore): RPS25 (Homo sapiens, 97.1); Rps25 (Mus musculus, 97.1); rps25 (Danio rerio, 94.0); rps25 (Xenopus tropicalis, 98.2); RpS25 (Drosophila melanogaster, 93.6); rps-25 (Caenorhabditis elegans, 90.1); AT2G21580 (Arabidopsis thaliana, 100.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:536007-536333:- | gene-YGR027C_AKU4011 | rna-NM_001181156.1_AKU4011 | cds-NP_011541.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:39506-39832:+ | gene-YGR027C_BG1 | rna-NM_001181156.1_BG1 | cds-NP_011541.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:537511-537837:- | gene-YGR027C_Bruggeman | rna-NM_001181156.1_Bruggeman | cds-NP_011541.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:536334-536660:- | gene-YGR027C_CAT1 | rna-NM_001181156.1_CAT1 | cds-NP_011541.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:537338-537664:- | gene-YGR027C_CBS1585 | rna-NM_001181156.1_CBS1585 | cds-NP_011541.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:532109-532435:- | gene-YGR027C_CBS436 | rna-NM_001181156.1_CBS436 | cds-NP_011541.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:530096-530422:- | gene-YGR027C_CBS6412 | rna-NM_001181156.1_CBS6412 | cds-NP_011541.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:534182-534508:- | gene-YGR027C_CBS6413 | rna-NM_001181156.1_CBS6413 | cds-NP_011541.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:533973-534299:- | gene-YGR027C_CENPK1137D | rna-NM_001181156.1_CENPK1137D | cds-NP_011541.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:524221-524547:- | gene-YGR027C_EthanolRed | rna-NM_001181156.1_EthanolRed | cds-NP_011541.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:527709-528035:- | gene-YGR027C_FaliES1 | rna-NM_001181156.1_FaliES1 | cds-NP_011541.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:66396-66722:- | gene-YGR027C_JAY291 | rna-NM_001181156.1_JAY291 | cds-NP_011541.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:534409-534735:- | gene-YGR027C_MUCL30387 | rna-NM_001181156.1_MUCL30387 | cds-NP_011541.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:537028-537354:- | gene-YGR027C_MUCL30388 | rna-NM_001181156.1_MUCL30388 | cds-NP_011541.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:533160-533486:- | gene-YGR027C_MUCL39482 | rna-NM_001181156.1_MUCL39482 | cds-NP_011541.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:542938-543264:- | gene-YGR027C_MUCL42920 | rna-NM_001181156.1_MUCL42920 | cds-NP_011541.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:534132-534458:- | gene-YGR027C_NCIM3186 | rna-NM_001181156.1_NCIM3186 | cds-NP_011541.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:527343-527669:- | gene-YGR027C_NCYC1407 | rna-NM_001181156.1_NCYC1407 | cds-NP_011541.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:530218-530544:- | gene-YGR027C_PE2H3 | rna-NM_001181156.1_PE2H3 | cds-NP_011541.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:535325-535651:- | gene-YGR027C_PE2H4 | rna-NM_001181156.1_PE2H4 | cds-NP_011541.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:534132-534458:- | gene-YGR027C_S288C | rna-NM_001181156.1_S288C | cds-NP_011541.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:21187-21513:+ | gene-YGR027C_SA1 | rna-NM_001181156.1_SA1 | cds-NP_011541.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:547046-547372:- | gene-YGR027C_ThermosaccDry | rna-NM_001181156.1_ThermosaccDry | cds-NP_011541.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:637488-637814:- | gene-YGR027C_VR1 | rna-NM_001181156.1_VR1 | cds-NP_011541.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:2528-2854:- | gene-YGR027C_ZTW1 | rna-NM_001181156.1_ZTW1 | cds-NP_011541.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:535716-536042:- | gene-YGR027C_Sparadoxus | rna-NM_001181156.1_Sparadoxus | cds-NP_011541.1_Sparadoxus | 96.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |