Gene name: RPS23B
Reference locus (S288C): YPR132W
Gene biotype: protein_coding
Description: Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23B has a paralog, RPS23A, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal
Top 10 interactors (score): RPL14B (0.999); RPS6A (0.999); RPL4A (0.999); RPS26B (0.999); RPL33A (0.999); RPS8B (0.999); RPL16B (0.999); RPS19A (0.999); RPL24A (0.999); RPP0 (0.999); RPS30A (0.999); RPL20B (0.999); RPL29 (0.999); RPS17B (0.999); RPL23A (0.999); RPS26A (0.999); RPS27A (0.999); RPL17A (0.999); RPL40A (0.999); RPS21B (0.999)
Homologues (species, bitscore): RPS23 (Homo sapiens, 231.5); Rps23 (Mus musculus, 231.5); rps23 (Danio rerio, 229.9); rps23 (Xenopus tropicalis, 228.0); RpS23 (Drosophila melanogaster, 226.1); rps-23 (Caenorhabditis elegans, 222.2); AT5G02960 (Arabidopsis thaliana, 217.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:766651-767453:+ | gene-YPR132W_AKU4011 | rna-NM_001184229.1_AKU4011 | cds-NP_015457.1_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:129913-130715:- | gene-YPR132W_BG1 | rna-NM_001184229.1_BG1 | cds-NP_015457.1_BG1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:847301-848103:+ | gene-YPR132W_Bruggeman | rna-NM_001184229.1_Bruggeman | cds-NP_015457.1_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:889225-890027:+ | gene-YPR132W_CAT1 | rna-NM_001184229.1_CAT1 | cds-NP_015457.1_CAT1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:770907-771709:+ | gene-YPR132W_CBS1585 | rna-NM_001184229.1_CBS1585 | cds-NP_015457.1_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:785381-786183:+ | gene-YPR132W_CBS436 | rna-NM_001184229.1_CBS436 | cds-NP_015457.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:773631-774433:+ | gene-YPR132W_CBS6412 | rna-NM_001184229.1_CBS6412 | cds-NP_015457.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:768353-769155:+ | gene-YPR132W_CBS6413 | rna-NM_001184229.1_CBS6413 | cds-NP_015457.1_CBS6413 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:795020-795822:+ | gene-YPR132W_CENPK1137D | rna-NM_001184229.1_CENPK1137D | cds-NP_015457.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1088817-1089619:+ | gene-YPR132W_EthanolRed | rna-NM_001184229.1_EthanolRed | cds-NP_015457.1_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:768364-769166:+ | gene-YPR132W_FaliES1 | rna-NM_001184229.1_FaliES1 | cds-NP_015457.1_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000036.1:25641-26443:+ | gene-YPR132W_JAY291 | rna-NM_001184229.1_JAY291 | cds-NP_015457.1_JAY291 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:787492-788294:+ | gene-YPR132W_MUCL30387 | rna-NM_001184229.1_MUCL30387 | cds-NP_015457.1_MUCL30387 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:787457-788259:+ | gene-YPR132W_MUCL30388 | rna-NM_001184229.1_MUCL30388 | cds-NP_015457.1_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:763415-764217:+ | gene-YPR132W_MUCL39482 | rna-NM_001184229.1_MUCL39482 | cds-NP_015457.1_MUCL39482 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:827212-828014:+ | gene-YPR132W_MUCL42920 | rna-NM_001184229.1_MUCL42920 | cds-NP_015457.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:794948-795750:+ | gene-YPR132W_NCIM3186 | rna-NM_001184229.1_NCIM3186 | cds-NP_015457.1_NCIM3186 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:772008-772810:+ | gene-YPR132W_NCYC1407 | rna-NM_001184229.1_NCYC1407 | cds-NP_015457.1_NCYC1407 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:778729-779531:+ | gene-YPR132W_PE2H3 | rna-NM_001184229.1_PE2H3 | cds-NP_015457.1_PE2H3 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:778377-779179:+ | gene-YPR132W_PE2H4 | rna-NM_001184229.1_PE2H4 | cds-NP_015457.1_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:794965-795767:+ | gene-YPR132W_S288C | rna-NM_001184229.1_S288C | cds-NP_015457.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:92761-93563:+ | gene-YPR132W_SA1 | rna-NM_001184229.1_SA1 | cds-NP_015457.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:767809-768611:+ | gene-YPR132W_ThermosaccDry | rna-NM_001184229.1_ThermosaccDry | cds-NP_015457.1_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:789634-790436:+ | gene-YPR132W_VR1 | rna-NM_001184229.1_VR1 | cds-NP_015457.1_VR1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:771564-772366:+ | gene-YPR132W_ZTW1 | rna-NM_001184229.1_ZTW1 | cds-NP_015457.1_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:773519-774330:+ | gene-YPR132W_Sparadoxus | rna-NM_001184229.1_Sparadoxus | cds-NP_015457.1_Sparadoxus | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |