Gene name: RPS23A
Reference locus (S288C): YGR118W
Gene biotype: protein_coding
Description: Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit; required for translational accuracy; homologous to mammalian ribosomal protein S23 and bacterial S12; RPS23A has a paralog, RPS23B, that arose from the whole genome duplication; deletion of both RPS23A and RPS23B is lethal
Top 10 interactors (score): RPS4A (0.999); RPS10B (0.999); RPS4B (0.999); RPL30 (0.999); RPL6A (0.999); RPL9B (0.999); RPL40B (0.999); RPL35A (0.999); RPL20A (0.999); RPS3 (0.999); RPS2 (0.999); RPL8B (0.999); RPL19A (0.999); RPS12 (0.999); RPS10A (0.999); RPS11A (0.999); RPS8A (0.999); RPL33B (0.999); RPS16B (0.999); RPL4B (0.999)
Homologues (species, bitscore): RPS23 (Homo sapiens, 231.5); Rps23 (Mus musculus, 231.5); rps23 (Danio rerio, 229.9); rps23 (Xenopus tropicalis, 228.0); RpS23 (Drosophila melanogaster, 226.1); rps-23 (Caenorhabditis elegans, 222.2); AT5G02960 (Arabidopsis thaliana, 217.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:706295-707049:+ | gene-YGR118W_AKU4011 | rna-NM_001181247.3_AKU4011 | cds-NP_011633.3_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000188.1:14764-15520:+ | gene-YGR118W_BG1 | rna-NM_001181247.3_BG1 | cds-NP_011633.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:707957-708711:+ | gene-YGR118W_Bruggeman | rna-NM_001181247.3_Bruggeman | cds-NP_011633.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:706182-706938:+ | gene-YGR118W_CAT1 | rna-NM_001181247.3_CAT1 | cds-NP_011633.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:707285-708039:+ | gene-YGR118W_CBS1585 | rna-NM_001181247.3_CBS1585 | cds-NP_011633.3_CBS1585 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:708906-709662:+ | gene-YGR118W_CBS436 | rna-NM_001181247.3_CBS436 | cds-NP_011633.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:698954-699708:+ | gene-YGR118W_CBS6412 | rna-NM_001181247.3_CBS6412 | cds-NP_011633.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:703888-704642:+ | gene-YGR118W_CBS6413 | rna-NM_001181247.3_CBS6413 | cds-NP_011633.3_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:726692-727448:+ | gene-YGR118W_CENPK1137D | rna-NM_001181247.3_CENPK1137D | cds-NP_011633.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:693378-694132:+ | gene-YGR118W_EthanolRed | rna-NM_001181247.3_EthanolRed | cds-NP_011633.3_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:697187-697941:+ | gene-YGR118W_FaliES1 | rna-NM_001181247.3_FaliES1 | cds-NP_011633.3_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000309.1:1-312:+ | gene-YGR118W_JAY291 | rna-NM_001181247.3_JAY291 | cds-NP_011633.3_JAY291 | 71.2 | 71.2 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:707382-708138:+ | gene-YGR118W_MUCL30387 | rna-NM_001181247.3_MUCL30387 | cds-NP_011633.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:707771-708525:+ | gene-YGR118W_MUCL30388 | rna-NM_001181247.3_MUCL30388 | cds-NP_011633.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:703012-703766:+ | gene-YGR118W_MUCL39482 | rna-NM_001181247.3_MUCL39482 | cds-NP_011633.3_MUCL39482 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:712781-713535:+ | gene-YGR118W_MUCL42920 | rna-NM_001181247.3_MUCL42920 | cds-NP_011633.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:726974-727730:+ | gene-YGR118W_NCIM3186 | rna-NM_001181247.3_NCIM3186 | cds-NP_011633.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:697705-698459:+ | gene-YGR118W_NCYC1407 | rna-NM_001181247.3_NCYC1407 | cds-NP_011633.3_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:711276-712032:+ | gene-YGR118W_PE2H3 | rna-NM_001181247.3_PE2H3 | cds-NP_011633.3_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:716394-717150:+ | gene-YGR118W_PE2H4 | rna-NM_001181247.3_PE2H4 | cds-NP_011633.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:726974-727730:+ | gene-YGR118W_S288C | rna-NM_001181247.3_S288C | cds-NP_011633.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:148307-149063:+ | gene-YGR118W_SA1 | rna-NM_001181247.3_SA1 | cds-NP_011633.3_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:717567-718321:+ | gene-YGR118W_ThermosaccDry | rna-NM_001181247.3_ThermosaccDry | cds-NP_011633.3_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:819994-820750:+ | gene-YGR118W_VR1 | rna-NM_001181247.3_VR1 | cds-NP_011633.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:19959-20713:+ | gene-YGR118W_ZTW1 | rna-NM_001181247.3_ZTW1 | cds-NP_011633.3_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:707417-708164:+ | gene-YGR118W_Sparadoxus | rna-NM_001181247.3_Sparadoxus | cds-NP_011633.3_Sparadoxus | 95.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |