Gene name: RPS22A
Reference locus (S288C): YJL190C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15A and bacterial S8; RPS22A has a paralog, RPS22B, that arose from the whole genome duplication
Top 10 interactors (score): RPS30A (0.999); RPP2A (0.999); RPL39 (0.999); RPL34A (0.999); RPL18B (0.999); RPL42A (0.999); RPL19B (0.999); RPS22B (0.999); RPL32 (0.999); RPL2A (0.999); RPS13 (0.999); RPS25B (0.999); RPS26B (0.999); RPS6A (0.999); RPL4A (0.999); RPL27A (0.999); RPL14B (0.999); RPL3 (0.999); RPS29B (0.999); RPL11B (0.999)
Homologues (species, bitscore): RPS15A (Homo sapiens, 218.4); Rps15a (Mus musculus, 218.4); rps15a (Danio rerio, 217.2); rps15a (Xenopus tropicalis, 177.9); RpS15Aa (Drosophila melanogaster, 223.0); rps-22 (Caenorhabditis elegans, 215.7); RPS15A (Arabidopsis thaliana, 222.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:63307-63699:- | gene-YJL190C_AKU4011 | rna-NM_001181623.1_AKU4011 | cds-NP_012345.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:40590-40982:- | gene-YJL190C_BG1 | rna-NM_001181623.1_BG1 | cds-NP_012345.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:75126-75518:- | gene-YJL190C_Bruggeman | rna-NM_001181623.1_Bruggeman | cds-NP_012345.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:78331-78723:- | gene-YJL190C_CAT1 | rna-NM_001181623.1_CAT1 | cds-NP_012345.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:68942-69334:- | gene-YJL190C_CBS1585 | rna-NM_001181623.1_CBS1585 | cds-NP_012345.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:93693-94085:- | gene-YJL190C_CBS436 | rna-NM_001181623.1_CBS436 | cds-NP_012345.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:65424-65816:- | gene-YJL190C_CBS6412 | rna-NM_001181623.1_CBS6412 | cds-NP_012345.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:66417-66809:- | gene-YJL190C_CBS6413 | rna-NM_001181623.1_CBS6413 | cds-NP_012345.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:57376-57768:- | gene-YJL190C_CENPK1137D | rna-NM_001181623.1_CENPK1137D | cds-NP_012345.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:67606-67998:- | gene-YJL190C_EthanolRed | rna-NM_001181623.1_EthanolRed | cds-NP_012345.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:72886-73278:- | gene-YJL190C_FaliES1 | rna-NM_001181623.1_FaliES1 | cds-NP_012345.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:45471-45863:+ | gene-YJL190C_JAY291 | rna-NM_001181623.1_JAY291 | cds-NP_012345.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:76854-77246:- | gene-YJL190C_MUCL30387 | rna-NM_001181623.1_MUCL30387 | cds-NP_012345.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:73015-73407:- | gene-YJL190C_MUCL30388 | rna-NM_001181623.1_MUCL30388 | cds-NP_012345.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:67684-68076:- | gene-YJL190C_MUCL39482 | rna-NM_001181623.1_MUCL39482 | cds-NP_012345.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:72286-72678:- | gene-YJL190C_MUCL42920 | rna-NM_001181623.1_MUCL42920 | cds-NP_012345.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:74889-75281:- | gene-YJL190C_NCIM3186 | rna-NM_001181623.1_NCIM3186 | cds-NP_012345.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:66294-66686:- | gene-YJL190C_NCYC1407 | rna-NM_001181623.1_NCYC1407 | cds-NP_012345.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:78990-79382:- | gene-YJL190C_PE2H3 | rna-NM_001181623.1_PE2H3 | cds-NP_012345.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:78629-79021:- | gene-YJL190C_PE2H4 | rna-NM_001181623.1_PE2H4 | cds-NP_012345.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:74910-75302:- | gene-YJL190C_S288C | rna-NM_001181623.1_S288C | cds-NP_012345.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:78580-78972:+ | gene-YJL190C_SA1 | rna-NM_001181623.1_SA1 | cds-NP_012345.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:66078-66470:- | gene-YJL190C_ThermosaccDry | rna-NM_001181623.1_ThermosaccDry | cds-NP_012345.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:72948-73340:- | gene-YJL190C_VR1 | rna-NM_001181623.1_VR1 | cds-NP_012345.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:53662-54054:- | gene-YJL190C_ZTW1 | rna-NM_001181623.1_ZTW1 | cds-NP_012345.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:78002-78394:- | gene-YJL190C_Sparadoxus | rna-NM_001181623.1_Sparadoxus | cds-NP_012345.1_Sparadoxus | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |