Gene name: RPS21B
Reference locus (S288C): YJL136C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S21, no bacterial homolog; RPS21B has a paralog, RPS21A, that arose from the whole genome duplication
Top 10 interactors (score): RPS26A (0.999); RPS8B (0.999); RPL18A (0.999); RPL33A (0.999); RPL24B (0.999); RPS0A (0.999); RPL21A (0.999); RPS25A (0.999); RPS28B (0.999); RPL17A (0.999); RPL23A (0.999); RPS27A (0.999); RPS7B (0.999); RPS17B (0.999); RPL29 (0.999); ASC1 (0.999); RPS31 (0.999); RPL35B (0.999); RPL17B (0.999); RPS30A (0.999)
Homologues (species, bitscore): RPS21 (Homo sapiens, 101.3); Rps21 (Mus musculus, 100.1); rps21 (Danio rerio, 99.8); rps21 (Xenopus tropicalis, 100.1); RpS21 (Drosophila melanogaster, 92.4); rps-21 (Caenorhabditis elegans, 102.8); AT3G53890 (Arabidopsis thaliana, 93.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:144845-145568:- | gene-YJL136C_AKU4011 | rna-NM_001181569.1_AKU4011 | cds-NP_012399.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:468152-468875:+ | gene-YJL136C_BG1 | rna-NM_001181569.1_BG1 | cds-NP_012399.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:156929-157652:- | gene-YJL136C_Bruggeman | rna-NM_001181569.1_Bruggeman | cds-NP_012399.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:160717-161440:- | gene-YJL136C_CAT1 | rna-NM_001181569.1_CAT1 | cds-NP_012399.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:150479-151202:- | gene-YJL136C_CBS1585 | rna-NM_001181569.1_CBS1585 | cds-NP_012399.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:175228-175951:- | gene-YJL136C_CBS436 | rna-NM_001181569.1_CBS436 | cds-NP_012399.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:146497-147220:- | gene-YJL136C_CBS6412 | rna-NM_001181569.1_CBS6412 | cds-NP_012399.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:147955-148678:- | gene-YJL136C_CBS6413 | rna-NM_001181569.1_CBS6413 | cds-NP_012399.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:139020-139743:- | gene-YJL136C_CENPK1137D | rna-NM_001181569.1_CENPK1137D | cds-NP_012399.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:148829-149552:- | gene-YJL136C_EthanolRed | rna-NM_001181569.1_EthanolRed | cds-NP_012399.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:154481-155204:- | gene-YJL136C_FaliES1 | rna-NM_001181569.1_FaliES1 | cds-NP_012399.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000099.1:35660-36383:- | gene-YJL136C_JAY291 | rna-NM_001181569.1_JAY291 | cds-NP_012399.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:159198-159921:- | gene-YJL136C_MUCL30387 | rna-NM_001181569.1_MUCL30387 | cds-NP_012399.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:155249-155972:- | gene-YJL136C_MUCL30388 | rna-NM_001181569.1_MUCL30388 | cds-NP_012399.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:149427-150150:- | gene-YJL136C_MUCL39482 | rna-NM_001181569.1_MUCL39482 | cds-NP_012399.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:154989-155712:- | gene-YJL136C_MUCL42920 | rna-NM_001181569.1_MUCL42920 | cds-NP_012399.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:156529-157252:- | gene-YJL136C_NCIM3186 | rna-NM_001181569.1_NCIM3186 | cds-NP_012399.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:147833-148556:- | gene-YJL136C_NCYC1407 | rna-NM_001181569.1_NCYC1407 | cds-NP_012399.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:160637-161360:- | gene-YJL136C_PE2H3 | rna-NM_001181569.1_PE2H3 | cds-NP_012399.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:160281-161004:- | gene-YJL136C_PE2H4 | rna-NM_001181569.1_PE2H4 | cds-NP_012399.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:156550-157273:- | gene-YJL136C_S288C | rna-NM_001181569.1_S288C | cds-NP_012399.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000085.1:41899-42622:+ | gene-YJL136C_SA1 | rna-NM_001181569.1_SA1 | cds-NP_012399.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:147672-148395:- | gene-YJL136C_ThermosaccDry | rna-NM_001181569.1_ThermosaccDry | cds-NP_012399.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:154753-155476:- | gene-YJL136C_VR1 | rna-NM_001181569.1_VR1 | cds-NP_012399.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:134964-135687:- | gene-YJL136C_ZTW1 | rna-NM_001181569.1_ZTW1 | cds-NP_012399.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:160236-160955:- | gene-YJL136C_Sparadoxus | rna-NM_001181569.1_Sparadoxus | cds-NP_012399.1_Sparadoxus | 96.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |