Gene name: RPS21A
Reference locus (S288C): YKR057W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S21, no bacterial homolog; RPS21A has a paralog, RPS21B, that arose from the whole genome duplication
Top 10 interactors (score): RPS24A (0.999); RPS24B (0.999); RPL1B (0.999); RPL5 (0.999); RPS10B (0.999); RPL21B (0.999); RPL43B (0.999); RPS4A (0.999); RPL7B (0.999); RPS0B (0.999); RPS6B (0.999); RPL37A (0.999); RPS5 (0.999); RPS4B (0.999); RPL30 (0.999); RPL23B (0.999); RPS23A (0.999); RPS18B (0.999); RPL36A (0.999); RPL34B (0.999)
Homologues (species, bitscore): RPS21 (Homo sapiens, 101.7); Rps21 (Mus musculus, 100.5); rps21 (Danio rerio, 99.8); rps21 (Xenopus tropicalis, 100.5); RpS21 (Drosophila melanogaster, 92.4); rps-21 (Caenorhabditis elegans, 103.2); AT3G53890 (Arabidopsis thaliana, 94.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:536953-537538:+ | gene-YKR057W_AKU4011 | rna-NM_001179847.3_AKU4011 | cds-NP_012983.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:105988-106573:- | gene-YKR057W_BG1 | rna-NM_001179847.3_BG1 | cds-NP_012983.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:559130-559714:+ | gene-YKR057W_Bruggeman | rna-NM_001179847.3_Bruggeman | cds-NP_012983.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:555554-556139:+ | gene-YKR057W_CAT1 | rna-NM_001179847.3_CAT1 | cds-NP_012983.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:549693-550278:+ | gene-YKR057W_CBS1585 | rna-NM_001179847.3_CBS1585 | cds-NP_012983.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:548525-549109:+ | gene-YKR057W_CBS436 | rna-NM_001179847.3_CBS436 | cds-NP_012983.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:533871-534456:+ | gene-YKR057W_CBS6412 | rna-NM_001179847.3_CBS6412 | cds-NP_012983.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:549513-550098:+ | gene-YKR057W_CBS6413 | rna-NM_001179847.3_CBS6413 | cds-NP_012983.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:551313-551898:+ | gene-YKR057W_CENPK1137D | rna-NM_001179847.3_CENPK1137D | cds-NP_012983.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:547274-547859:+ | gene-YKR057W_EthanolRed | rna-NM_001179847.3_EthanolRed | cds-NP_012983.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:550411-550996:+ | gene-YKR057W_FaliES1 | rna-NM_001179847.3_FaliES1 | cds-NP_012983.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:2805-3390:- | gene-YKR057W_JAY291 | rna-NM_001179847.3_JAY291 | cds-NP_012983.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:559528-560112:+ | gene-YKR057W_MUCL30387 | rna-NM_001179847.3_MUCL30387 | cds-NP_012983.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:553890-554475:+ | gene-YKR057W_MUCL30388 | rna-NM_001179847.3_MUCL30388 | cds-NP_012983.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:549021-549606:+ | gene-YKR057W_MUCL39482 | rna-NM_001179847.3_MUCL39482 | cds-NP_012983.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:555044-555628:+ | gene-YKR057W_MUCL42920 | rna-NM_001179847.3_MUCL42920 | cds-NP_012983.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:551646-552231:+ | gene-YKR057W_NCIM3186 | rna-NM_001179847.3_NCIM3186 | cds-NP_012983.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:549235-549820:+ | gene-YKR057W_NCYC1407 | rna-NM_001179847.3_NCYC1407 | cds-NP_012983.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:574601-575186:+ | gene-YKR057W_PE2H3 | rna-NM_001179847.3_PE2H3 | cds-NP_012983.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:558996-559581:+ | gene-YKR057W_PE2H4 | rna-NM_001179847.3_PE2H4 | cds-NP_012983.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:551657-552242:+ | gene-YKR057W_S288C | rna-NM_001179847.3_S288C | cds-NP_012983.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000093.1:34757-35342:+ | gene-YKR057W_SA1 | rna-NM_001179847.3_SA1 | cds-NP_012983.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:549650-550235:+ | gene-YKR057W_ThermosaccDry | rna-NM_001179847.3_ThermosaccDry | cds-NP_012983.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:549669-550254:+ | gene-YKR057W_VR1 | rna-NM_001179847.3_VR1 | cds-NP_012983.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:547639-548224:+ | gene-YKR057W_ZTW1 | rna-NM_001179847.3_ZTW1 | cds-NP_012983.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:573007-573591:+ | gene-YKR057W_Sparadoxus | rna-NM_001179847.3_Sparadoxus | cds-NP_012983.3_Sparadoxus | 94.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |