Gene name: RPS20
Reference locus (S288C): YHL015W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; overproduction suppresses mutations affecting RNA polymerase III-dependent transcription; homologous to mammalian ribosomal protein S20 and bacterial S10
Top 10 interactors (score): RPS4B (0.999); RPS10A (0.999); RPG1 (0.999); RPS12 (0.999); RPL19A (0.999); RPS16B (0.999); RPL33B (0.999); RPS8A (0.999); RPS4A (0.999); RPL21B (0.999); RPS10B (0.999); RPL34B (0.999); RPS23A (0.999); RPS11A (0.999); RPL30 (0.999); TMA19 (0.999); RPS18A (0.999); RPL16A (0.999); RPL6A (0.999); RPL4B (0.999)
Homologues (species, bitscore): RPS20 (Homo sapiens, 127.5); Rps20 (Mus musculus, 134.4); rbm6 (Xenopus tropicalis, 136.3); RpS20 (Drosophila melanogaster, 132.9); rps-20 (Caenorhabditis elegans, 129.0); RPS20A (Arabidopsis thaliana, 127.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:70360-70725:+ | gene-YHL015W_AKU4011 | rna-NM_001179095.1_AKU4011 | cds-NP_011848.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000180.1:6078-6443:- | gene-YHL015W_BG1 | rna-NM_001179095.1_BG1 | cds-NP_011848.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:77247-77612:+ | gene-YHL015W_Bruggeman | rna-NM_001179095.1_Bruggeman | cds-NP_011848.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:71207-71572:+ | gene-YHL015W_CAT1 | rna-NM_001179095.1_CAT1 | cds-NP_011848.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:70956-71321:+ | gene-YHL015W_CBS1585 | rna-NM_001179095.1_CBS1585 | cds-NP_011848.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:63451-63816:+ | gene-YHL015W_CBS436 | rna-NM_001179095.1_CBS436 | cds-NP_011848.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:70906-71271:+ | gene-YHL015W_CBS6412 | rna-NM_001179095.1_CBS6412 | cds-NP_011848.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:70336-70701:+ | gene-YHL015W_CBS6413 | rna-NM_001179095.1_CBS6413 | cds-NP_011848.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:68571-68936:+ | gene-YHL015W_CENPK1137D | rna-NM_001179095.1_CENPK1137D | cds-NP_011848.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:70584-70949:+ | gene-YHL015W_EthanolRed | rna-NM_001179095.1_EthanolRed | cds-NP_011848.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:70900-71265:+ | gene-YHL015W_FaliES1 | rna-NM_001179095.1_FaliES1 | cds-NP_011848.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000003.1:39572-39937:+ | gene-YHL015W_JAY291 | rna-NM_001179095.1_JAY291 | cds-NP_011848.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:73984-74349:+ | gene-YHL015W_MUCL30387 | rna-NM_001179095.1_MUCL30387 | cds-NP_011848.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:74932-75297:+ | gene-YHL015W_MUCL30388 | rna-NM_001179095.1_MUCL30388 | cds-NP_011848.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:69941-70306:+ | gene-YHL015W_MUCL39482 | rna-NM_001179095.1_MUCL39482 | cds-NP_011848.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:73902-74267:+ | gene-YHL015W_MUCL42920 | rna-NM_001179095.1_MUCL42920 | cds-NP_011848.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:75294-75659:+ | gene-YHL015W_NCIM3186 | rna-NM_001179095.1_NCIM3186 | cds-NP_011848.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:69401-69766:+ | gene-YHL015W_NCYC1407 | rna-NM_001179095.1_NCYC1407 | cds-NP_011848.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:65647-66012:+ | gene-YHL015W_PE2H3 | rna-NM_001179095.1_PE2H3 | cds-NP_011848.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:73088-73453:+ | gene-YHL015W_PE2H4 | rna-NM_001179095.1_PE2H4 | cds-NP_011848.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:75412-75777:+ | gene-YHL015W_S288C | rna-NM_001179095.1_S288C | cds-NP_011848.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:59740-60105:+ | gene-YHL015W_SA1 | rna-NM_001179095.1_SA1 | cds-NP_011848.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:71995-72360:+ | gene-YHL015W_ThermosaccDry | rna-NM_001179095.1_ThermosaccDry | cds-NP_011848.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:76724-77089:+ | gene-YHL015W_VR1 | rna-NM_001179095.1_VR1 | cds-NP_011848.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:63164-63529:+ | gene-YHL015W_ZTW1 | rna-NM_001179095.1_ZTW1 | cds-NP_011848.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:69499-69864:+ | gene-YHL015W_Sparadoxus | rna-NM_001179095.1_Sparadoxus | cds-NP_011848.1_Sparadoxus | 98.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |