Gene name: RPS1B
Reference locus (S288C): YML063W
Gene biotype: protein_coding
Description: Ribosomal protein 10 (rp10) of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1B has a paralog, RPS1A, that arose from the whole genome duplication
Top 10 interactors (score): RPS7A (0.999); RPL14A (0.999); RPS5 (0.999); RPL38 (0.999); RPL37A (0.999); RPS14A (0.999); RPS15 (0.999); RPP1A (0.999); RPL28 (0.999); RPS11B (0.999); RPL6B (0.999); RPL2B (0.999); RPL36B (0.999); RPS16A (0.999); RPL31A (0.999); RPS19B (0.999); RPS9A (0.999); RPS9B (0.999); RPL26A (0.999); RPS28A (0.999)
Homologues (species, bitscore): RPS3A (Homo sapiens, 310.1); Rps3a1 (Mus musculus, 308.9); rps3a (Danio rerio, 302.8); rps3a (Xenopus tropicalis, 308.9); RpS3A (Drosophila melanogaster, 276.6); rps-1 (Caenorhabditis elegans, 265.8); AT4G34670 (Arabidopsis thaliana, 330.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:140224-140991:+ | gene-YML063W_AKU4011 | rna-NM_001182422.1_AKU4011 | cds-NP_013648.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:335163-335930:- | gene-YML063W_BG1 | rna-NM_001182422.1_BG1 | cds-NP_013648.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:146358-147125:+ | gene-YML063W_Bruggeman | rna-NM_001182422.1_Bruggeman | cds-NP_013648.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:148025-148792:+ | gene-YML063W_CAT1 | rna-NM_001182422.1_CAT1 | cds-NP_013648.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:140233-141000:+ | gene-YML063W_CBS1585 | rna-NM_001182422.1_CBS1585 | cds-NP_013648.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:146119-146886:+ | gene-YML063W_CBS436 | rna-NM_001182422.1_CBS436 | cds-NP_013648.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:140941-141708:+ | gene-YML063W_CBS6412 | rna-NM_001182422.1_CBS6412 | cds-NP_013648.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:139416-140183:+ | gene-YML063W_CBS6413 | rna-NM_001182422.1_CBS6413 | cds-NP_013648.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:141209-141976:+ | gene-YML063W_CENPK1137D | rna-NM_001182422.1_CENPK1137D | cds-NP_013648.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:140497-141264:+ | gene-YML063W_EthanolRed | rna-NM_001182422.1_EthanolRed | cds-NP_013648.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:141004-141771:+ | gene-YML063W_FaliES1 | rna-NM_001182422.1_FaliES1 | cds-NP_013648.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:15352-16119:- | gene-YML063W_JAY291 | rna-NM_001182422.1_JAY291 | cds-NP_013648.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:144879-145646:+ | gene-YML063W_MUCL30387 | rna-NM_001182422.1_MUCL30387 | cds-NP_013648.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:148065-148832:+ | gene-YML063W_MUCL30388 | rna-NM_001182422.1_MUCL30388 | cds-NP_013648.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:140244-141011:+ | gene-YML063W_MUCL39482 | rna-NM_001182422.1_MUCL39482 | cds-NP_013648.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:146062-146829:+ | gene-YML063W_MUCL42920 | rna-NM_001182422.1_MUCL42920 | cds-NP_013648.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:146436-147203:+ | gene-YML063W_NCIM3186 | rna-NM_001182422.1_NCIM3186 | cds-NP_013648.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:141039-141806:+ | gene-YML063W_NCYC1407 | rna-NM_001182422.1_NCYC1407 | cds-NP_013648.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:146433-147200:+ | gene-YML063W_PE2H3 | rna-NM_001182422.1_PE2H3 | cds-NP_013648.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:146297-147064:+ | gene-YML063W_PE2H4 | rna-NM_001182422.1_PE2H4 | cds-NP_013648.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:146482-147249:+ | gene-YML063W_S288C | rna-NM_001182422.1_S288C | cds-NP_013648.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:37013-37780:- | gene-YML063W_SA1 | rna-NM_001182422.1_SA1 | cds-NP_013648.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:140296-141063:+ | gene-YML063W_ThermosaccDry | rna-NM_001182422.1_ThermosaccDry | cds-NP_013648.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:144645-145412:+ | gene-YML063W_VR1 | rna-NM_001182422.1_VR1 | cds-NP_013648.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:119833-120600:+ | gene-YML063W_ZTW1 | rna-NM_001182422.1_ZTW1 | cds-NP_013648.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:151409-152176:+ | gene-YML063W_Sparadoxus | rna-NM_001182422.1_Sparadoxus | cds-NP_013648.1_Sparadoxus | 98.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |