Gene name: RPS1A
Reference locus (S288C): YLR441C
Gene biotype: protein_coding
Description: Ribosomal protein 10 (rp10) of the small (40S) subunit; homologous to mammalian ribosomal protein S3A, no bacterial homolog; RPS1A has a paralog, RPS1B, that arose from the whole genome duplication
Top 10 interactors (score): RPL30 (0.999); RPS18A (0.999); RPL27B (0.999); RPL13A (0.999); RPL1A (0.999); RPS14B (0.999); RPL12A (0.999); RPS10B (0.999); RPL21B (0.999); RPS4A (0.999); RPS23A (0.999); RPS4B (0.999); ENP1 (0.999); RPS16B (0.999); RPS8A (0.999); RPL13B (0.999); RPS12 (0.999); RPL19A (0.999); RPS11A (0.999); RPS10A (0.999)
Homologues (species, bitscore): RPS3A (Homo sapiens, 307.8); Rps3a1 (Mus musculus, 306.6); rps3a (Danio rerio, 300.8); rps3a (Xenopus tropicalis, 306.6); RpS3A (Drosophila melanogaster, 280.0); rps-1 (Caenorhabditis elegans, 268.9); AT4G34670 (Arabidopsis thaliana, 332.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:956409-957176:- | gene-YLR441C_AKU4011 | rna-NM_001182329.1_AKU4011 | cds-NP_013546.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:188874-189641:- | gene-YLR441C_BG1 | rna-NM_001182329.1_BG1 | cds-NP_013546.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:994718-995485:- | gene-YLR441C_Bruggeman | rna-NM_001182329.1_Bruggeman | cds-NP_013546.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:990720-991487:- | gene-YLR441C_CAT1 | rna-NM_001182329.1_CAT1 | cds-NP_013546.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:992000-992767:- | gene-YLR441C_CBS1585 | rna-NM_001182329.1_CBS1585 | cds-NP_013546.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:981352-982119:- | gene-YLR441C_CBS436 | rna-NM_001182329.1_CBS436 | cds-NP_013546.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1028040-1028807:- | gene-YLR441C_CBS6412 | rna-NM_001182329.1_CBS6412 | cds-NP_013546.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:992788-993555:- | gene-YLR441C_CBS6413 | rna-NM_001182329.1_CBS6413 | cds-NP_013546.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1002758-1003525:- | gene-YLR441C_CENPK1137D | rna-NM_001182329.1_CENPK1137D | cds-NP_013546.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:949429-950196:- | gene-YLR441C_EthanolRed | rna-NM_001182329.1_EthanolRed | cds-NP_013546.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:984700-985467:- | gene-YLR441C_FaliES1 | rna-NM_001182329.1_FaliES1 | cds-NP_013546.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:33214-33981:+ | gene-YLR441C_JAY291 | rna-NM_001182329.1_JAY291 | cds-NP_013546.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:993570-994337:- | gene-YLR441C_MUCL30387 | rna-NM_001182329.1_MUCL30387 | cds-NP_013546.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:1000927-1001694:- | gene-YLR441C_MUCL30388 | rna-NM_001182329.1_MUCL30388 | cds-NP_013546.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:993220-993987:- | gene-YLR441C_MUCL39482 | rna-NM_001182329.1_MUCL39482 | cds-NP_013546.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:993718-994485:- | gene-YLR441C_MUCL42920 | rna-NM_001182329.1_MUCL42920 | cds-NP_013546.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1018115-1018882:- | gene-YLR441C_NCIM3186 | rna-NM_001182329.1_NCIM3186 | cds-NP_013546.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:1002654-1003421:- | gene-YLR441C_NCYC1407 | rna-NM_001182329.1_NCYC1407 | cds-NP_013546.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:989105-989872:- | gene-YLR441C_PE2H3 | rna-NM_001182329.1_PE2H3 | cds-NP_013546.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:988849-989616:- | gene-YLR441C_PE2H4 | rna-NM_001182329.1_PE2H4 | cds-NP_013546.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1018141-1018908:- | gene-YLR441C_S288C | rna-NM_001182329.1_S288C | cds-NP_013546.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:41041-41808:+ | gene-YLR441C_SA1 | rna-NM_001182329.1_SA1 | cds-NP_013546.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:987779-988546:- | gene-YLR441C_ThermosaccDry | rna-NM_001182329.1_ThermosaccDry | cds-NP_013546.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:994210-994977:- | gene-YLR441C_VR1 | rna-NM_001182329.1_VR1 | cds-NP_013546.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:318053-318820:- | gene-YLR441C_ZTW1 | rna-NM_001182329.1_ZTW1 | cds-NP_013546.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:967096-967863:- | gene-YLR441C_Sparadoxus | rna-NM_001182329.1_Sparadoxus | cds-NP_013546.1_Sparadoxus | 97.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |