Gene name: RPS19B
Reference locus (S288C): YNL302C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; required for assembly and maturation of pre-40 S particles; homologous to mammalian ribosomal protein S19, no bacterial homolog; mutations in human RPS19 are associated with Diamond Blackfan anemia; RPS19B has a paralog, RPS19A, that arose from the whole genome duplication
Top 10 interactors (score): RPL23A (0.999); RPS26A (0.999); RPS27A (0.999); RPL17A (0.999); RPS17B (0.999); RPS8B (0.999); RPL33A (0.999); RPL24A (0.999); RPP0 (0.999); RPS19A (0.999); RPL16B (0.999); RPS21B (0.999); RPL40A (0.999); RPS30A (0.999); RPL17B (0.999); RPL42A (0.999); RPL19B (0.999); RPS22B (0.999); RPL32 (0.999); RPL29 (0.999)
Homologues (species, bitscore): RPS19 (Homo sapiens, 144.1); Rps19 (Mus musculus, 146.7); rps19 (Danio rerio, 146.7); rps19 (Xenopus tropicalis, 148.3); RpS19a (Drosophila melanogaster, 133.3); rps-19 (Caenorhabditis elegans, 114.8); AT5G15520 (Arabidopsis thaliana, 144.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:55758-56743:- | gene-YNL302C_AKU4011 | rna-NM_001183140.1_AKU4011 | cds-NP_014097.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000074.1:33900-34886:+ | gene-YNL302C_BG1 | rna-NM_001183140.1_BG1 | cds-NP_014097.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:65094-66079:- | gene-YNL302C_Bruggeman | rna-NM_001183140.1_Bruggeman | cds-NP_014097.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:67710-68695:- | gene-YNL302C_CAT1 | rna-NM_001183140.1_CAT1 | cds-NP_014097.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:56090-57075:- | gene-YNL302C_CBS1585 | rna-NM_001183140.1_CBS1585 | cds-NP_014097.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:56579-57564:- | gene-YNL302C_CBS436 | rna-NM_001183140.1_CBS436 | cds-NP_014097.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:52749-53734:- | gene-YNL302C_CBS6412 | rna-NM_001183140.1_CBS6412 | cds-NP_014097.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:52938-53923:- | gene-YNL302C_CBS6413 | rna-NM_001183140.1_CBS6413 | cds-NP_014097.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:55785-56770:- | gene-YNL302C_CENPK1137D | rna-NM_001183140.1_CENPK1137D | cds-NP_014097.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:52780-53765:- | gene-YNL302C_EthanolRed | rna-NM_001183140.1_EthanolRed | cds-NP_014097.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:53679-54664:- | gene-YNL302C_FaliES1 | rna-NM_001183140.1_FaliES1 | cds-NP_014097.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000390.1:857-1842:+ | gene-YNL302C_JAY291 | rna-NM_001183140.1_JAY291 | cds-NP_014097.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:65351-66336:- | gene-YNL302C_MUCL30387 | rna-NM_001183140.1_MUCL30387 | cds-NP_014097.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:58383-59369:- | gene-YNL302C_MUCL30388 | rna-NM_001183140.1_MUCL30388 | cds-NP_014097.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:53726-54711:- | gene-YNL302C_MUCL39482 | rna-NM_001183140.1_MUCL39482 | cds-NP_014097.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:55415-56401:- | gene-YNL302C_MUCL42920 | rna-NM_001183140.1_MUCL42920 | cds-NP_014097.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:61927-62912:- | gene-YNL302C_NCIM3186 | rna-NM_001183140.1_NCIM3186 | cds-NP_014097.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:55058-56043:- | gene-YNL302C_NCYC1407 | rna-NM_001183140.1_NCYC1407 | cds-NP_014097.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:52257-53242:- | gene-YNL302C_PE2H3 | rna-NM_001183140.1_PE2H3 | cds-NP_014097.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:51645-52630:- | gene-YNL302C_PE2H4 | rna-NM_001183140.1_PE2H4 | cds-NP_014097.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:61958-62943:- | gene-YNL302C_S288C | rna-NM_001183140.1_S288C | cds-NP_014097.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000052.1:34286-35271:+ | gene-YNL302C_SA1 | rna-NM_001183140.1_SA1 | cds-NP_014097.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:54536-55521:- | gene-YNL302C_ThermosaccDry | rna-NM_001183140.1_ThermosaccDry | cds-NP_014097.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:67075-68060:- | gene-YNL302C_VR1 | rna-NM_001183140.1_VR1 | cds-NP_014097.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000029.1:45752-46735:- | gene-YNL302C_ZTW1 | rna-NM_001183140.1_ZTW1 | cds-NP_014097.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:63794-64782:- | gene-YNL302C_Sparadoxus | rna-NM_001183140.1_Sparadoxus | cds-NP_014097.1_Sparadoxus | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |